Index _ | A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | W | X | Y _ __add__() (aiida.orm.NumericType method) __all__ (in module autodoc2.analysis) __authors__ (in module aiida) __bool__() (aiida.orm.Bool method) (aiida.orm.LinkManager method) __call__() (aiida.engine.ExitCodesNamespace method) (aiida.orm.Collection method) __contains__() (aiida.orm.Dict method) (aiida.orm.EntityExtras method) (aiida.orm.NodeAttributes method) (aiida.orm.NodeLinksManager method) (aiida.tools.GroupPath method) (autodoc2.db.Database method) (autodoc2.db.InMemoryDb method) __copy__() (aiida.orm.Data method) (aiida.orm.Node method) __copyright__ (in module aiida) __deepcopy__() (aiida.common.AttributeDict method) (aiida.orm.Data method) (aiida.orm.Node method) (aiida.orm.QueryBuilder method) __del__() (aiida.repository.SandboxRepositoryBackend method) __delattr__() (aiida.common.AttributeDict method) (aiida.engine.ProcessBuilderNamespace method) __delitem__() (aiida.engine.ProcessBuilderNamespace method) (aiida.orm.List method) __dir__() (aiida.common.AttributeDict method) (aiida.common.FixedFieldsAttributeDict method) (aiida.engine.ProcessBuilderNamespace method) (aiida.orm.AttributeManager method) (aiida.orm.CalcJobResultManager method) (aiida.orm.NodeLinksManager method) __div__() (aiida.orm.NumericType method) __enter__() (aiida.common.ProgressReporterAbstract method) (aiida.engine.Runner method) (aiida.transports.Transport method) __eq__() (aiida.manage.Config method) (aiida.orm.BaseType method) (aiida.orm.Dict method) (aiida.orm.EnumData method) (aiida.orm.List method) (aiida.orm.Node method) (aiida.repository.File method) (aiida.tools.GroupPath method) __exit__() (aiida.common.ProgressReporterAbstract method) (aiida.engine.Runner method) (aiida.transports.Transport method) __float__() (aiida.orm.NumericType method) __floordiv__() (aiida.orm.NumericType method) __ge__() (aiida.orm.NumericType method) __getattr__() (aiida.common.AttributeDict method) (aiida.orm.AttributeManager method) (aiida.orm.CalcJobResultManager method) (aiida.orm.Group method) (aiida.orm.Node method) (aiida.orm.NodeLinksManager method) __getitem__() (aiida.common.DefaultFieldsAttributeDict method) (aiida.engine.ProcessBuilderNamespace method) (aiida.orm.AttributeManager method) (aiida.orm.CalcJobResultManager method) (aiida.orm.Dict method) (aiida.orm.List method) (aiida.orm.NodeLinksManager method) (aiida.tools.GroupPath method) __getstate__() (aiida.common.AttributeDict method) (aiida.orm.Entity method) __gt__() (aiida.orm.NumericType method) __hash__() (aiida.orm.Node method) __int__() (aiida.orm.Bool method) (aiida.orm.NumericType method) __iter__() (aiida.engine.ProcessBuilderNamespace method) (aiida.orm.AttributeManager method) (aiida.orm.CalcJobResultManager method) (aiida.orm.LinkManager method) (aiida.orm.NodeLinksManager method) (aiida.tools.GroupPath method) __le__() (aiida.orm.NumericType method) __len__() (aiida.engine.ProcessBuilderNamespace method) (aiida.orm.List method) (aiida.tools.GroupPath method) __license__ (in module aiida) __lt__() (aiida.orm.NumericType method) (aiida.tools.GroupPath method) __mod__() (aiida.orm.NumericType method) __mul__() (aiida.orm.NumericType method) __ne__() (aiida.manage.Config method) __new__() (aiida.orm.AbstractNodeMeta method) __next__() (aiida.orm.LinkManager method) __paper__ (in module aiida) __paper_short__ (in module aiida) __pow__() (aiida.orm.NumericType method) __radd__() (aiida.orm.NumericType method) __rdiv__() (aiida.orm.NumericType method) __repr__() (aiida.cmdline.AbsolutePathParamType method) (aiida.cmdline.EmailType method) (aiida.cmdline.EntryPointType method) (aiida.cmdline.HostnameType method) (aiida.cmdline.LabelStringType method) (aiida.cmdline.LazyChoice method) (aiida.cmdline.MpirunCommandParamType method) (aiida.cmdline.NonEmptyStringParamType method) (aiida.cmdline.ShebangParamType method) (aiida.common.AttributeDict method) (aiida.engine.ProcessBuilderNamespace method) (aiida.manage.Profile method) (aiida.orm.Computer method) (aiida.orm.Group method) (aiida.orm.Kind method) (aiida.orm.Node method) (aiida.orm.NodeLinksManager method) (aiida.orm.QueryBuilder method) (aiida.orm.Site method) (aiida.repository.File method) (aiida.tools.GroupPath method) (aiida.tools.Orbital method) (aiida.transports.Transport method) __rfloordiv__() (aiida.orm.NumericType method) __rmod__() (aiida.orm.NumericType method) __rmul__() (aiida.orm.NumericType method) __rsub__() (aiida.orm.NumericType method) __rtruediv__() (aiida.orm.NumericType method) __setattr__() (aiida.common.AttributeDict method) (aiida.common.DefaultFieldsAttributeDict method) (aiida.common.FixedFieldsAttributeDict method) (aiida.engine.ProcessBuilderNamespace method) (aiida.orm.AttributeManager method) __setitem__() (aiida.common.FixedFieldsAttributeDict method) (aiida.engine.PortNamespace method) (aiida.engine.ProcessBuilderNamespace method) (aiida.orm.Dict method) (aiida.orm.List method) __setstate__() (aiida.common.AttributeDict method) __str__() (aiida.manage.ConfigValidationError method) (aiida.manage.Option method) (aiida.orm.AuthInfo method) (aiida.orm.BaseType method) (aiida.orm.Code method) (aiida.orm.Comment method) (aiida.orm.Computer method) (aiida.orm.Group method) (aiida.orm.Kind method) (aiida.orm.List method) (aiida.orm.Node method) (aiida.orm.NodeLinksManager method) (aiida.orm.ProcessNode method) (aiida.orm.QueryBuilder method) (aiida.orm.Site method) (aiida.orm.User method) (aiida.repository.DiskObjectStoreRepositoryBackend method) (aiida.repository.Repository method) (aiida.repository.SandboxRepositoryBackend method) (aiida.schedulers.Scheduler method) (aiida.tools.Orbital method) (aiida.tools.RealhydrogenOrbital method) (aiida.transports.SshTransport method) (aiida.transports.Transport method) __sub__() (aiida.orm.NumericType method) __truediv__() (aiida.orm.NumericType method) (aiida.tools.GroupPath method) __version__ (in module aiida) (in module autodoc2) _action_awaitables() (aiida.engine.WorkChain method) _add_group_type_filter() (aiida.orm.QueryBuilder method) _add_node_type_filter() (aiida.orm.QueryBuilder method) _add_outputs_from_cache() (aiida.orm.Node method) _add_process_type_filter() (aiida.orm.QueryBuilder method) _adjust_default_cell() (aiida.orm.StructureData method) _append_text_validator() (aiida.orm.Computer class method) _arrayandname_validator() (aiida.orm.XyData static method) _arraynames_from_files() (aiida.orm.ArrayData method) _arraynames_from_properties() (aiida.orm.ArrayData method) _ase (aiida.orm.CifData attribute) _atomic_write() (aiida.manage.Config method) _await_condition() (aiida.engine.DaemonClient static method) _backup() (aiida.manage.Config class method) _base_fields_optional (aiida.tools.Orbital attribute) (aiida.tools.RealhydrogenOrbital attribute) _base_fields_required (aiida.tools.Orbital attribute) (aiida.tools.RealhydrogenOrbital attribute) _build_process_label() (aiida.engine.Process method) _cachable (aiida.orm.CalculationNode attribute) (aiida.orm.Node attribute) _cached_arrays (aiida.orm.ArrayData attribute) _change_reference() (aiida.orm.KpointsData method) _check_mutability() (aiida.orm.NodeRepository method) _check_mutability_attributes() (aiida.orm.Node method) _check_projections_bands() (aiida.orm.ProjectionData method) _clean() (aiida.orm.RemoteData method) _click_choice (aiida.cmdline.LazyChoice property) _clone() (aiida.orm.NodeRepository method) _close_proxies() (aiida.transports.SshTransport method) _closed (aiida.engine.Runner attribute) _CLS_COLLECTION (aiida.orm.AuthInfo attribute) (aiida.orm.Comment attribute) (aiida.orm.Computer attribute) (aiida.orm.Entity attribute) (aiida.orm.Group attribute) (aiida.orm.Log attribute) (aiida.orm.Node attribute) (aiida.orm.User attribute) _CLS_NODE_CACHING (aiida.orm.Node attribute) (aiida.orm.ProcessNode attribute) _CLS_NODE_LINKS (aiida.orm.CalcFunctionNode attribute) (aiida.orm.Node attribute) (aiida.orm.ProcessNode attribute) (aiida.orm.WorkflowNode attribute) (aiida.orm.WorkFunctionNode attribute) _coerce_packages() (in module autodoc2.config) _common_auth_options (aiida.transports.Transport attribute) _communicator (aiida.engine.Runner attribute) _considered_handlers_extra (aiida.engine.BaseRestartWorkChain attribute) _construct_attribute_dict() (aiida.orm.NodeLinksManager method) _CONTEXT (aiida.engine.WorkChain attribute) _continue() (aiida.manage.ProcessLauncher method) _controller (aiida.engine.Runner attribute) _convert_link_types() (aiida.tools.Graph static method) _copy() (aiida.orm.NodeRepository method) _create_and_setup_db_record() (aiida.engine.Process method) _DAEMON_NAME (aiida.engine.DaemonClient attribute) _dc_kwargs (in module autodoc2.analysis) _default_fields (aiida.common.CalcInfo attribute) (aiida.common.CodeInfo attribute) (aiida.common.DefaultFieldsAttributeDict attribute) (aiida.schedulers.JobInfo attribute) (aiida.schedulers.JobResource attribute) (aiida.schedulers.JobTemplate attribute) (aiida.schedulers.MachineInfo attribute) (aiida.schedulers.NodeNumberJobResource attribute) (aiida.schedulers.ParEnvJobResource attribute) _default_link_types() (aiida.tools.Graph static method) _default_mpiprocs_per_machine_validator() (aiida.orm.Computer class method) _DEFAULT_SAFE_OPEN_INTERVAL (aiida.transports.Transport attribute) _deprecated_attr_methods (aiida.orm.Node attribute) _deprecated_caching_methods (aiida.orm.Node attribute) _deprecated_comment_methods (aiida.orm.Node attribute) _deprecated_extra_methods (aiida.orm.Group attribute) (aiida.orm.Node attribute) _deprecated_links_methods (aiida.orm.Node attribute) _deprecated_repo_methods (aiida.orm.Node attribute) _description_validator() (aiida.orm.Computer class method) _deserialize_date() (aiida.schedulers.JobInfo static method) _deserialize_float_constants() (aiida.orm.JsonableData class method) _deserialize_job_state() (aiida.schedulers.JobInfo static method) _dimension (aiida.orm.KpointsData property) _dimensionality_label (aiida.orm.StructureData attribute) _do_step() (aiida.engine.WorkChain method) _EDGE_TAG_DELIM (aiida.orm.QueryBuilder attribute) _ENDPOINT_PROTOCOL (aiida.engine.DaemonClient attribute) _ensure_updating() (aiida.engine.JobsList method) _entity_base_cls() (aiida.orm.Collection static method) _example() (in module autodoc2.sphinx.docstring) _exec_command_internal() (aiida.transports.SshTransport method) (aiida.transports.Transport method) _exec_cp() (aiida.transports.SshTransport method) _export_format_replacements (aiida.orm.Data attribute) _exportcontent() (aiida.orm.Data method) _factory_mapping (aiida.cmdline.PluginParamType attribute) _features (aiida.schedulers.Scheduler attribute) _file_cls (aiida.repository.Repository attribute) _filtered (aiida.engine.ProcessFuture attribute) _find_orbitals_and_indices() (aiida.orm.ProjectionData method) _flat_inputs() (aiida.engine.Process method) _flat_outputs() (aiida.engine.Process method) _flatten_inputs() (aiida.engine.Process method) _flatten_outputs() (aiida.engine.Process method) _from_index_to_arrayname() (aiida.orm.ProjectionData static method) _func() (aiida.engine.FunctionProcess static method) _func_args (aiida.engine.FunctionProcess attribute) _FUNC_MAPPER (in module autodoc2.analysis) _get_aiida_entity_res() (aiida.orm.QueryBuilder static method) _get_allow_agent_suggestion_string() (aiida.transports.SshTransport class method) _get_array_entries() (aiida.orm.ArrayData method) _get_band_segments() (aiida.orm.BandsData method) _get_bandplot_data() (aiida.orm.BandsData method) _get_cli_options() (aiida.orm.AbstractCode class method) (aiida.orm.ContainerizedCode class method) (aiida.orm.InstalledCode class method) (aiida.orm.PortableCode class method) _get_compress_suggestion_string() (aiida.transports.SshTransport class method) _get_converters() (aiida.orm.Data method) _get_detailed_job_info_command() (aiida.schedulers.Scheduler method) _get_dict() (aiida.orm.AttributeManager method) _get_exporters() (aiida.orm.Data method) _get_full_name() (in module autodoc2.analysis) _get_gss_auth_suggestion_string() (aiida.transports.SshTransport class method) _get_gss_deleg_creds_suggestion_string() (aiida.transports.SshTransport class method) _get_gss_host_suggestion_string() (aiida.transports.SshTransport class method) _get_gss_kex_suggestion_string() (aiida.transports.SshTransport class method) _get_importers() (aiida.orm.Data method) _get_joblist_command() (aiida.schedulers.Scheduler method) _get_jobs_from_scheduler() (aiida.engine.JobsList method) _get_jobs_with_scheduler() (aiida.engine.JobsList method) _get_key_filename_suggestion_string() (aiida.transports.SshTransport class method) _get_key_policy_suggestion_string() (aiida.transports.SshTransport class method) _get_keys() (aiida.orm.NodeLinksManager method) _get_kill_command() (aiida.schedulers.Scheduler method) _get_load_system_host_keys_suggestion_string() (aiida.transports.SshTransport class method) _get_look_for_keys_suggestion_string() (aiida.transports.SshTransport class method) _get_mpl_body_template() (aiida.orm.BandsData static method) _get_namespace_list() (aiida.engine.Process static method) _get_next_update_delay() (aiida.engine.JobsList method) _get_node_by_link_label() (aiida.orm.NodeLinksManager method) _get_object() (aiida.orm.JsonableData method) _get_object_ase() (aiida.orm.CifData method) (aiida.orm.StructureData method) _get_object_phonopyatoms() (aiida.orm.StructureData method) _get_object_pycifrw() (aiida.orm.CifData method) _get_object_pymatgen() (aiida.orm.StructureData method) _get_object_pymatgen_molecule() (aiida.orm.StructureData method) _get_object_pymatgen_structure() (aiida.orm.StructureData method) _get_parent_name() (in module autodoc2.analysis) _get_port_suggestion_string() (aiida.transports.SshTransport class method) _get_proxy_command_suggestion_string() (aiida.transports.SshTransport class method) _get_proxy_jump_suggestion_string() (aiida.transports.SshTransport class method) _get_query_builder_id_identifier() (aiida.orm.OrmEntityLoader class method) _get_query_builder_label_identifier() (aiida.orm.CalculationEntityLoader class method) (aiida.orm.CodeEntityLoader class method) (aiida.orm.ComputerEntityLoader class method) (aiida.orm.GroupEntityLoader class method) (aiida.orm.NodeEntityLoader class method) (aiida.orm.OrmEntityLoader class method) _get_query_builder_uuid_identifier() (aiida.orm.OrmEntityLoader class method) _get_raw_file_header() (in module aiida) _get_run_line() (aiida.schedulers.Scheduler method) _get_safe_interval_suggestion_string() (aiida.transports.Transport class method) _get_submit_command() (aiida.schedulers.Scheduler method) _get_submit_script_environment_variables() (aiida.schedulers.Scheduler method) _get_submit_script_footer() (aiida.schedulers.Scheduler method) _get_submit_script_header() (aiida.schedulers.Scheduler method) _get_timeout_suggestion_string() (aiida.transports.SshTransport class method) _get_unique_tag() (aiida.orm.QueryBuilder method) _get_use_login_shell_suggestion_string() (aiida.transports.Transport class method) _get_username_suggestion_string() (aiida.transports.SshTransport class method) _gotocomputer_string() (aiida.transports.Transport method) _has_job_state_changed() (aiida.engine.JobsList static method) _hash_ignored_attributes (aiida.orm.Node attribute) _hash_ignored_attributes() (aiida.orm.CalcJobNode method) _hostname_validator() (aiida.orm.Computer class method) _init_entry_points() (aiida.cmdline.PluginParamType method) _inputs() (aiida.engine.ProcessBuilderNamespace method) _insert_awaitable() (aiida.engine.WorkChain method) _insert_file() (aiida.repository.Repository method) _internal_kind_tags (aiida.orm.StructureData attribute) _internal_validate() (aiida.orm.TrajectoryData method) _is_ellipsis() (in module autodoc2.astroid_utils) _is_hidden_cache (autodoc2.render.base.RendererBase attribute) _iter_args() (in module autodoc2.astroid_utils) _job_resource_class (aiida.schedulers.Scheduler attribute) _KEY_ATTRIBUTE_APPEND_TEXT (aiida.orm.AbstractCode attribute) _KEY_ATTRIBUTE_DEFAULT_CALC_JOB_PLUGIN (aiida.orm.AbstractCode attribute) _KEY_ATTRIBUTE_ENGINE_COMMAND (aiida.orm.ContainerizedCode attribute) _KEY_ATTRIBUTE_FILEPATH_EXECUTABLE (aiida.orm.InstalledCode attribute) (aiida.orm.PortableCode attribute) _KEY_ATTRIBUTE_IMAGE_NAME (aiida.orm.ContainerizedCode attribute) _KEY_ATTRIBUTE_PREPEND_TEXT (aiida.orm.AbstractCode attribute) _KEY_ATTRIBUTE_USE_DOUBLE_QUOTES (aiida.orm.AbstractCode attribute) _KEY_EXTRA_IS_HIDDEN (aiida.orm.AbstractCode attribute) _label_validator() (aiida.orm.Computer class method) _LIKE_REGEX (in module autodoc2.db) _LIST_KEY (aiida.orm.List attribute) _load_node() (aiida.tools.Graph method) _load_regex_renderers() (in module autodoc2.config) _load_renderer() (in module autodoc2.config) _load_results() (aiida.orm.CalcJobResultManager method) _local_listdir() (aiida.transports.SshTransport static method) _logger (aiida.orm.Computer attribute) (aiida.orm.Node attribute) (aiida.schedulers.Scheduler attribute) _MAGIC_CHECK (aiida.transports.Transport attribute) _matplotlib_get_dict() (aiida.orm.BandsData method) _MAX_EXEC_COMMAND_LOG_SIZE (aiida.transports.SshTransport attribute) _merge() (aiida.engine.ProcessBuilderNamespace method) _merge_annotations() (in module autodoc2.astroid_utils) _mpirun_command_validator() (aiida.orm.Computer method) _namespace_separator (aiida.orm.NodeLinksManager attribute) _node_class (aiida.engine.CalcJob attribute) (aiida.engine.Process attribute) (aiida.engine.WorkChain attribute) _on_awaitable_finished() (aiida.engine.WorkChain method) _os_path_split_asunder() (aiida.transports.SshTransport static method) _parse_joblist_output() (aiida.schedulers.Scheduler method) _parse_kill_output() (aiida.schedulers.Scheduler method) _PARSE_POLICIES (aiida.orm.CifData attribute) _PARSE_POLICY_DEFAULT (aiida.orm.CifData attribute) _parse_submit_output() (aiida.schedulers.Scheduler method) _parse_xyz() (aiida.orm.StructureData method) _parse_xyz_pos() (aiida.orm.TrajectoryData method) _parse_xyz_vel() (aiida.orm.TrajectoryData method) _perform_dry_run() (aiida.engine.CalcJob method) _perform_import() (aiida.engine.CalcJob method) _persister (aiida.engine.Runner attribute) _plugin_type_string (aiida.orm.Node attribute) _poll_process() (aiida.engine.ProcessFuture method) (aiida.engine.Runner method) _pre_process_path() (aiida.repository.Repository static method) _prepare_agr() (aiida.orm.BandsData method) _prepare_agr_batch() (aiida.orm.BandsData method) _prepare_chemdoodle() (aiida.orm.StructureData method) _prepare_cif() (aiida.orm.CifData method) (aiida.orm.StructureData method) (aiida.orm.TrajectoryData method) _prepare_dat_blocks() (aiida.orm.BandsData method) _prepare_dat_multicolumn() (aiida.orm.BandsData method) _prepare_gnuplot() (aiida.orm.BandsData method) _prepare_json() (aiida.orm.ArrayData method) (aiida.orm.BandsData method) (aiida.orm.UpfData method) _prepare_mpl_pdf() (aiida.orm.BandsData method) _prepare_mpl_png() (aiida.orm.BandsData method) _prepare_mpl_singlefile() (aiida.orm.BandsData method) _prepare_mpl_withjson() (aiida.orm.BandsData method) _prepare_upf() (aiida.orm.UpfData method) _prepare_xsf() (aiida.orm.StructureData method) (aiida.orm.TrajectoryData method) _prepare_xyz() (aiida.orm.StructureData method) _prepend_text_validator() (aiida.orm.Computer class method) _process_class (aiida.engine.BaseRestartWorkChain attribute) _process_filters() (aiida.orm.QueryBuilder static method) _prune() (aiida.engine.ProcessBuilderNamespace method) _put_object_from_filelike() (aiida.repository.AbstractRepositoryBackend method) (aiida.repository.DiskObjectStoreRepositoryBackend method) (aiida.repository.SandboxRepositoryBackend method) _query_type_string (aiida.orm.Node attribute) _RE_DELIMS (in module autodoc2.render.myst_) (in module autodoc2.render.rst_) _recursive_merge() (aiida.engine.ProcessBuilderNamespace method) _reformat_cls_base_myst() (autodoc2.render.myst_.MystRenderer method) _reformat_cls_base_rst() (autodoc2.render.rst_.RstRenderer method) _repository (aiida.orm.NodeRepository property) _repr_pretty_() (aiida.engine.ProcessBuilder method) _resolve_awaitable() (aiida.engine.WorkChain method) _resolve_nested_context() (aiida.engine.WorkChain method) _run() (aiida.engine.Runner method) _save_checkpoint() (aiida.engine.Process method) _SCAN_TYPE_DEFAULT (aiida.orm.CifData attribute) _SCAN_TYPES (aiida.orm.CifData attribute) _scheduler_type_validator() (aiida.orm.Computer class method) _serialize_date() (aiida.schedulers.JobInfo static method) _serialize_job_state() (aiida.schedulers.JobInfo static method) _set_cell() (aiida.orm.KpointsData method) _SET_INCOMPATIBILITIES (aiida.orm.CifData attribute) _set_incompatibilities (aiida.orm.StructureData attribute) _set_labels() (aiida.orm.KpointsData method) _set_local() (aiida.orm.Code method) _set_parents() (in module autodoc2.sphinx.autodoc) _set_pbc() (aiida.orm.BandsData method) (aiida.orm.KpointsData method) _set_remote() (aiida.orm.Code method) _setup_db_record() (aiida.engine.FunctionProcess method) (aiida.engine.Process method) _setup_inputs() (aiida.engine.CalcJob method) (aiida.engine.Process method) _setup_metadata() (aiida.engine.CalcJob method) (aiida.engine.Process method) _setup_version_info() (aiida.engine.Process method) _source_attributes (aiida.orm.Data attribute) _spec_class (aiida.engine.CalcJob attribute) (aiida.engine.Process attribute) (aiida.engine.WorkChain attribute) _special_serializers (aiida.schedulers.JobInfo attribute) _start_daemon() (aiida.engine.DaemonClient method) _STEPPER_STATE (aiida.engine.WorkChain attribute) _storable (aiida.orm.CalculationNode attribute) (aiida.orm.Data attribute) (aiida.orm.Node attribute) (aiida.orm.RemoteStashData attribute) (aiida.orm.RemoteStashFolderData attribute) (aiida.orm.WorkflowNode attribute) _store() (aiida.orm.Node method) (aiida.orm.NodeRepository method) _store_from_cache() (aiida.orm.Node method) _store_nodes() (aiida.engine.WorkChain method) _symlink() (aiida.transports.SshTransport method) _tools (aiida.orm.CalcJobNode attribute) _transport_type_validator() (aiida.orm.Computer class method) _type (aiida.orm.Bool attribute) (aiida.orm.Float attribute) (aiida.orm.Int attribute) (aiida.orm.Str attribute) _type_string (aiida.orm.Group attribute) _unstorable_message (aiida.orm.CalculationNode attribute) (aiida.orm.Data attribute) (aiida.orm.Node attribute) (aiida.orm.ProcessNode attribute) (aiida.orm.WorkflowNode attribute) _updatable_attributes (aiida.orm.Node attribute) _updatable_attributes() (aiida.orm.CalcJobNode method) (aiida.orm.ProcessNode method) (aiida.orm.WorkChainNode method) _update() (aiida.engine.ProcessBuilderNamespace method) _update_job_info() (aiida.engine.JobsList method) _update_process_status() (aiida.engine.WorkChain method) _update_repository_metadata() (aiida.orm.NodeRepository method) _update_requests_outstanding() (aiida.engine.JobsList method) _using_list_reference() (aiida.orm.List method) _valid_auth_options (aiida.transports.SshTransport attribute) (aiida.transports.Transport attribute) _valid_auth_params (aiida.transports.Transport attribute) _valid_connect_options (aiida.transports.SshTransport attribute) _valid_connect_params (aiida.transports.SshTransport attribute) _valid_fields (aiida.common.FixedFieldsAttributeDict attribute) _VALID_PROJECTION_KEYS (aiida.orm.QueryBuilder attribute) _validate() (aiida.orm.ArrayData method) (aiida.orm.CifData method) (aiida.orm.Code method) (aiida.orm.InstalledCode method) (aiida.orm.Node method) (aiida.orm.PortableCode method) (aiida.orm.RemoteData method) (aiida.orm.SinglefileData method) (aiida.orm.StructureData method) (aiida.orm.TrajectoryData method) (aiida.orm.UpfData method) _validate_bands_occupations() (aiida.orm.BandsData method) _validate_hidden_objects() (in module autodoc2.config) _validate_keys() (aiida.tools.Orbital method) (aiida.tools.RealhydrogenOrbital method) _validate_kpoints_weights() (aiida.orm.KpointsData method) _validate_list_tuple_regex_str() (in module autodoc2.config) _validate_path() (aiida.tools.GroupPath method) _validate_regex_list() (in module autodoc2.config) _validate_replace_list() (in module autodoc2.config) _validate_retrieval_directive() (aiida.orm.CalcJobNode static method) _validate_storability() (aiida.orm.Node method) _values (aiida.orm.CifData attribute) _verdi_bin (aiida.engine.DaemonClient property) _verify_are_parents_stored() (aiida.orm.Node method) _warn() (in module autodoc2.sphinx.utils) _workdir_validator() (aiida.orm.Computer class method) _wrap_bare_dict_inputs() (aiida.engine.BaseRestartWorkChain method) _yield_assign() (in module autodoc2.analysis) A AbsolutePathParamType (class in aiida.cmdline) AbstractCode (class in aiida.orm) AbstractNodeMeta (class in aiida.orm) AbstractRepositoryBackend (class in aiida.repository) accepts_default_memory_per_machine() (aiida.schedulers.JobResource class method) accepts_default_mpiprocs_per_machine() (aiida.schedulers.JobResource class method) (aiida.schedulers.NodeNumberJobResource class method) (aiida.schedulers.ParEnvJobResource class method) add() (autodoc2.db.Database method) (autodoc2.db.InMemoryDb method) add_edge() (aiida.tools.Graph method) add_filter() (aiida.orm.QueryBuilder method) add_incoming() (aiida.tools.Graph method) add_node() (aiida.tools.Graph method) add_nodes() (aiida.orm.Group method) add_origin_to_targets() (aiida.tools.Graph method) add_origins_to_targets() (aiida.tools.Graph method) add_outgoing() (aiida.tools.Graph method) add_profile() (aiida.manage.Config method) add_projection() (aiida.orm.QueryBuilder method) add_verbosity_option() (aiida.cmdline.VerdiCommandGroup static method) aiida module aiida.cmdline module aiida.common module aiida.engine module aiida.manage module aiida.orm module aiida.parsers module aiida.plugins module aiida.repository module aiida.schedulers module aiida.tools module aiida.transports module AIIDA_LOGGER (in module aiida.common) AiidaException AiiDAPersister (class in aiida.engine) all (aiida.orm.EntityExtras property) (aiida.orm.NodeAttributes property) (autodoc2.utils.ItemData attribute) all() (aiida.orm.Collection method) (aiida.orm.LinkManager method) (aiida.orm.QueryBuilder method) all_link_labels() (aiida.orm.LinkManager method) all_link_pairs() (aiida.orm.LinkManager method) ALL_MISSING (autodoc2.utils.WarningSubtypes attribute) all_nodes() (aiida.orm.LinkManager method) ALL_RESOLUTION (autodoc2.utils.WarningSubtypes attribute) AllResolutionError AllResolver (class in autodoc2.resolve_all) AllResolveResult (class in autodoc2.resolve_all) ALPHABET (aiida.cmdline.LabelStringType attribute) analyse_all() (in module autodoc2.cli) analyse_module() (in module autodoc2.analysis) analyze_query() (aiida.orm.QueryBuilder method) annotation (autodoc2.utils.ItemData attribute) annotations (autodoc2.config.Config attribute) app_main (in module autodoc2.cli) APPEND (aiida.engine.AwaitableAction attribute) append() (aiida.orm.List method) (aiida.orm.QueryBuilder method) append_() (in module aiida.engine) append_atom() (aiida.orm.StructureData method) append_kind() (aiida.orm.StructureData method) append_site() (aiida.orm.StructureData method) append_text (aiida.orm.AbstractCode property) args (autodoc2.utils.ItemData attribute) args_to_dict() (aiida.engine.FunctionProcess class method) ARGS_TYPE (in module autodoc2.utils) array_labels (aiida.orm.BandsData property) array_prefix (aiida.orm.ArrayData attribute) ArrayData (class in aiida.orm) as_dict() (aiida.orm.QueryBuilder method) as_sql() (aiida.orm.QueryBuilder method) as_triple() (autodoc2.config.Config method) (autodoc2.config.PackageConfig method) ASCENDING (in module aiida.orm) ase (aiida.orm.CifData property) ASSIGN (aiida.engine.AwaitableAction attribute) assign_() (in module aiida.engine) AttributeDict (class in aiida.common) AttributeManager (class in aiida.orm) auth_options() (aiida.transports.Transport method) AUTHINFO (aiida.orm.EntityTypes attribute) AuthInfo (class in aiida.orm) auto_mode (autodoc2.config.PackageConfig attribute) autodoc2 module autodoc2.analysis module autodoc2.astroid_utils module autodoc2.cli module autodoc2.config module autodoc2.db module autodoc2.render module autodoc2.render.base module autodoc2.render.myst_ module autodoc2.render.rst_ module autodoc2.resolve_all module autodoc2.sphinx module autodoc2.sphinx.autodoc module autodoc2.sphinx.docstring module autodoc2.sphinx.extension module autodoc2.sphinx.summary module autodoc2.sphinx.utils module autodoc2.utils module autodoc2_annotations configuration value autodoc2_class_docstring configuration value autodoc2_class_inheritance configuration value autodoc2_deprecated_module_regexes configuration value autodoc2_docstring_parser_regexes configuration value autodoc2_docstrings configuration value autodoc2_hidden_objects configuration value autodoc2_hidden_regexes configuration value autodoc2_index_template configuration value autodoc2_module_all_regexes configuration value autodoc2_module_summary configuration value autodoc2_no_index configuration value autodoc2_output_dir configuration value autodoc2_packages configuration value autodoc2_packages[auto_mode] configuration value autodoc2_packages[exclude_dirs] configuration value autodoc2_packages[exclude_files] configuration value autodoc2_packages[from_git_clone] configuration value autodoc2_packages[module] configuration value autodoc2_packages[path] configuration value autodoc2_render_plugin configuration value autodoc2_render_plugin_regexes configuration value autodoc2_replace_annotations configuration value autodoc2_replace_bases configuration value autodoc2_skip_module_regexes configuration value autodoc2_sort_names configuration value AutodocObject (class in autodoc2.sphinx.autodoc) AutodocSummary (class in autodoc2.sphinx.summary) AutoGroup (class in aiida.orm) Awaitable (class in aiida.engine) AwaitableAction (class in aiida.engine) AwaitableTarget (class in aiida.engine) B backend (aiida.orm.Collection property) (aiida.orm.Entity property) (aiida.orm.QueryBuilder property) (aiida.repository.Repository property) (aiida.tools.Graph property) backend_entity (aiida.orm.Entity property) BandsData (class in aiida.orm) base() (aiida.orm.Group method) (aiida.orm.Node method) BaseFactory() (in module aiida.plugins) BaseRestartWorkChain (class in aiida.engine) bases (autodoc2.utils.ItemData attribute) BaseType (class in aiida.orm) Bool (class in aiida.orm) BROKER_DEFAULTS (in module aiida.manage) browse (aiida.tools.GroupPath property) build() (aiida.engine.FunctionProcess static method) build_process_type() (aiida.engine.Process class method) C CALC_ID (aiida.engine.Process.SaveKeys attribute) CALC_JOB_STATE_KEY (aiida.orm.CalcJobNode attribute) calcfunction() (in module aiida.engine) CalcFunctionNode (class in aiida.orm) CalcInfo (class in aiida.common) CalcJob (class in aiida.engine) CalcJobImporter (class in aiida.engine) CalcJobImporterFactory() (in module aiida.plugins) CalcJobNode (class in aiida.orm) CalcJobOutputPort (class in aiida.engine) CalcJobProcessSpec (class in aiida.engine) CalcJobResultManager (class in aiida.orm) CalcJobState (class in aiida.common) CalculationEntityLoader (class in aiida.orm) CalculationFactory() (in module aiida.plugins) CalculationNode (class in aiida.orm) CalculationParamType (class in aiida.cmdline) CalculationTools (class in aiida.tools) CALL_CALC (aiida.common.LinkType attribute) call_client() (aiida.engine.DaemonClient method) call_on_process_finish() (aiida.engine.Runner method) CALL_WORK (aiida.common.LinkType attribute) called (aiida.orm.ProcessNode property) called_descendants (aiida.orm.ProcessNode property) caller (aiida.orm.ProcessNode property) can_run_on() (aiida.orm.Code method) can_run_on_computer() (aiida.orm.AbstractCode method) (aiida.orm.Code method) (aiida.orm.InstalledCode method) (aiida.orm.PortableCode method) cell (aiida.orm.KpointsData property) (aiida.orm.StructureData property) cell_angles (aiida.orm.StructureData property) cell_lengths (aiida.orm.StructureData property) change_source() (in module autodoc2.sphinx.docstring) chdir() (aiida.transports.SshTransport method) (aiida.transports.Transport method) check_and_migrate_config() (in module aiida.manage) check_db() (aiida.manage.Postgres method) check_dbuser() (aiida.manage.Postgres method) checkpoint (aiida.orm.ProcessNode property) CHECKPOINT_KEY (aiida.orm.ProcessNode attribute) checks_url() (aiida.cmdline.PathOrUrl method) children (aiida.tools.GroupPath property) children() (aiida.orm.QueryBuilder method) chmod() (aiida.transports.SshTransport method) (aiida.transports.Transport method) choices (aiida.cmdline.LazyChoice property) chown() (aiida.transports.SshTransport method) (aiida.transports.Transport method) cif_from_ase() (in module aiida.orm) CifData (class in aiida.orm) CircularImportError circus_log_file (aiida.engine.DaemonClient property) circus_pid_file (aiida.engine.DaemonClient property) circus_port_file (aiida.engine.DaemonClient property) circus_socket_endpoints (aiida.engine.DaemonClient property) circus_socket_file (aiida.engine.DaemonClient property) class_docstring (autodoc2.config.Config attribute) class_inheritance (autodoc2.config.Config attribute) class_node_type() (aiida.orm.Node method) cleanup() (aiida.engine.ProcessFuture method) clear() (aiida.orm.EntityExtras method) (aiida.orm.Group method) (aiida.orm.NodeAttributes method) clear_cache() (autodoc2.resolve_all.AllResolver method) clear_internal_cache() (aiida.orm.ArrayData method) clear_kinds() (aiida.orm.StructureData method) clear_orbitals() (aiida.orm.OrbitalData method) clear_sites() (aiida.orm.StructureData method) cli_validate_label_uniqueness() (aiida.orm.AbstractCode static method) (aiida.orm.InstalledCode static method) clone() (aiida.orm.Data method) (aiida.repository.Repository method) close() (aiida.engine.Runner method) (aiida.transports.SshTransport method) (aiida.transports.Transport method) ClosedStorage cls (aiida.tools.GroupPath property) cmd_start_daemon() (aiida.engine.DaemonClient method) cmd_start_daemon_worker (aiida.engine.DaemonClient property) Code (class in aiida.orm) CodeEntityLoader (class in aiida.orm) CodeInfo (class in aiida.common) CodeParamType (class in aiida.cmdline) CodeRunMode (class in aiida.common) Collection (class in aiida.orm) collection() (aiida.orm.Entity method) Collection() (aiida.orm.Node method) COMMENT (aiida.orm.EntityTypes attribute) Comment (class in aiida.orm) communicator (aiida.engine.Runner property) compare_with() (aiida.orm.Kind method) computer (aiida.orm.AuthInfo property) COMPUTER (aiida.orm.EntityTypes attribute) computer (aiida.orm.InstalledCode property) (aiida.orm.Node property) Computer (class in aiida.orm) ComputerEntityLoader (class in aiida.orm) ComputerParamType (class in aiida.cmdline) config (autodoc2.render.base.RendererBase property) Config (class in aiida.manage) (class in autodoc2.config) CONFIG_ERROR (autodoc2.utils.WarningSubtypes attribute) config_needs_migrating() (in module aiida.manage) CONFIG_PREFIX (in module autodoc2.config) config_schema() (in module aiida.manage) ConfigOptionParamType (class in aiida.cmdline) configuration value autodoc2_annotations autodoc2_class_docstring autodoc2_class_inheritance autodoc2_deprecated_module_regexes autodoc2_docstring_parser_regexes autodoc2_docstrings autodoc2_hidden_objects autodoc2_hidden_regexes autodoc2_index_template autodoc2_module_all_regexes autodoc2_module_summary autodoc2_no_index autodoc2_output_dir autodoc2_packages autodoc2_packages[auto_mode] autodoc2_packages[exclude_dirs] autodoc2_packages[exclude_files] autodoc2_packages[from_git_clone] autodoc2_packages[module] autodoc2_packages[path] autodoc2_render_plugin autodoc2_render_plugin_regexes autodoc2_replace_annotations autodoc2_replace_bases autodoc2_skip_module_regexes autodoc2_sort_names ConfigurationError ConfigurationVersionError configure() (aiida.orm.Computer method) ConfigValidationError (class in aiida.manage) console (in module autodoc2.cli) construct_awaitable() (in module aiida.engine) ContainerizedCode (class in aiida.orm) content (aiida.orm.Comment property) ContentNotExistent context_class (aiida.cmdline.VerdiCommandGroup attribute) controller (aiida.engine.Runner property) convert() (aiida.cmdline.AbsolutePathParamType method) (aiida.cmdline.CodeParamType method) (aiida.cmdline.ConfigOptionParamType method) (aiida.cmdline.EmailType method) (aiida.cmdline.EntryPointType method) (aiida.cmdline.FileOrUrl method) (aiida.cmdline.GroupParamType method) (aiida.cmdline.HostnameType method) (aiida.cmdline.IdentifierParamType method) (aiida.cmdline.LabelStringType method) (aiida.cmdline.LazyChoice method) (aiida.cmdline.MpirunCommandParamType method) (aiida.cmdline.MultipleValueParamType method) (aiida.cmdline.NonEmptyStringParamType method) (aiida.cmdline.PathOrUrl method) (aiida.cmdline.PluginParamType method) (aiida.cmdline.ProfileParamType method) (aiida.cmdline.ShebangParamType method) (aiida.cmdline.UserParamType method) (aiida.orm.Data method) convert_to_bool() (in module aiida.transports) COPY (aiida.common.StashMode attribute) copy() (aiida.manage.Profile method) (aiida.orm.Computer method) (aiida.transports.SshTransport method) (aiida.transports.Transport method) (autodoc2.analysis.State method) copy_db() (aiida.manage.Postgres method) copy_from_remote_to_remote() (aiida.transports.Transport method) copy_tree() (aiida.orm.NodeRepository method) (aiida.repository.Repository method) copyfile() (aiida.transports.SshTransport method) (aiida.transports.Transport method) copytree() (aiida.transports.SshTransport method) (aiida.transports.Transport method) CorruptStorage count() (aiida.orm.Collection method) (aiida.orm.Group method) (aiida.orm.List method) (aiida.orm.QueryBuilder method) CREATE (aiida.common.LinkType attribute) create_callback() (in module aiida.common) create_command() (aiida.cmdline.DynamicEntryPointCommandGroup method) create_db() (aiida.manage.Postgres method) (in module autodoc2.cli) create_dbuser() (aiida.manage.Postgres method) create_dbuser_db_safe() (aiida.manage.Postgres method) create_directory() (aiida.repository.Repository method) create_inputs() (aiida.engine.FunctionProcess class method) create_job_resource() (aiida.schedulers.Scheduler class method) create_option() (aiida.cmdline.DynamicEntryPointCommandGroup static method) create_options() (aiida.cmdline.DynamicEntryPointCommandGroup method) creator (aiida.orm.Data property) ctime (aiida.orm.Comment property) (aiida.orm.Node property) ctx (aiida.engine.WorkChain property) CURRENT_CONFIG_VERSION (in module aiida.manage) D DAEMON_ERROR_NOT_RUNNING (aiida.engine.DaemonClient attribute) DAEMON_ERROR_TIMEOUT (aiida.engine.DaemonClient attribute) daemon_log_file (aiida.engine.DaemonClient property) daemon_name (aiida.engine.DaemonClient property) daemon_pid_file (aiida.engine.DaemonClient property) DaemonClient (class in aiida.engine) Data (class in aiida.orm) Database (class in autodoc2.db) DataFactory() (in module aiida.plugins) DataParamType (class in aiida.cmdline) db_exists() (aiida.manage.Postgres method) DbContentError dbenv() (in module aiida.cmdline) DbImporterFactory() (in module aiida.plugins) dbinfo (aiida.manage.Postgres property) dbnode_id (aiida.orm.Log property) dbuser_exists() (aiida.manage.Postgres method) debug() (aiida.orm.QueryBuilder method) decode_input_args() (aiida.engine.Process method) deconvert_default() (aiida.cmdline.ProfileParamType static method) decrease_workers() (aiida.engine.DaemonClient method) DEFAULT (aiida.common.GraphTraversalRules attribute) default (aiida.manage.Option property) default_calc_job_plugin (aiida.orm.AbstractCode property) DEFAULT_FILENAME (aiida.orm.SinglefileData attribute) default_link_styles() (in module aiida.tools) default_memory_per_machine_validator() (aiida.orm.Computer class method) DEFAULT_MINIMUM_JOB_POLL_INTERVAL (aiida.transports.Transport attribute) default_node_styles() (in module aiida.tools) default_node_sublabels() (in module aiida.tools) default_output_node (aiida.engine.CalcJobProcessSpec property) default_profile_name (aiida.manage.Config property) default_user_email (aiida.manage.Profile property) DefaultFieldsAttributeDict (class in aiida.common) defaultkeys() (aiida.common.DefaultFieldsAttributeDict method) define() (aiida.engine.BaseRestartWorkChain class method) (aiida.engine.CalcJob class method) (aiida.engine.Process class method) DELETE (aiida.common.GraphTraversalRules attribute) delete() (aiida.orm.EntityExtras method) (aiida.orm.NodeAttributes method) (aiida.repository.Repository method) delete_array() (aiida.orm.ArrayData method) delete_checkpoint() (aiida.engine.AiiDAPersister method) (aiida.orm.ProcessNode method) delete_circus_socket_directory() (aiida.engine.DaemonClient method) delete_group() (aiida.tools.GroupPath method) delete_group_nodes() (in module aiida.tools) DELETE_LOGGER (in module aiida.tools) delete_many() (aiida.orm.EntityExtras method) (aiida.orm.NodeAttributes method) delete_nodes() (in module aiida.tools) delete_object() (aiida.orm.NodeRepository method) (aiida.repository.AbstractRepositoryBackend method) (aiida.repository.Repository method) delete_objects() (aiida.repository.AbstractRepositoryBackend method) (aiida.repository.DiskObjectStoreRepositoryBackend method) (aiida.repository.SandboxRepositoryBackend method) delete_process_checkpoints() (aiida.engine.AiiDAPersister method) delete_profile() (aiida.manage.Config method) delete_property() (aiida.orm.Computer method) delete_state() (aiida.orm.CalcJobNode method) delimiter (aiida.tools.GroupPath property) deprecated_module_regexes (autodoc2.config.Config attribute) desc (aiida.common.ProgressReporterAbstract property) DESCENDING (in module aiida.orm) description (aiida.manage.Option property) (aiida.orm.Computer property) (aiida.orm.Group property) (aiida.orm.Node property) deserialize_field() (aiida.schedulers.JobInfo class method) dict (aiida.orm.Dict property) Dict (class in aiida.orm) dict() (aiida.orm.QueryBuilder method) dictionary (aiida.manage.Config property) (aiida.manage.Profile property) DIRECTORY (aiida.repository.FileType attribute) dirpath (aiida.manage.Config property) disable_caching() (in module aiida.manage) DiskObjectStoreRepositoryBackend (class in aiida.repository) distinct() (aiida.orm.QueryBuilder method) do_break (aiida.engine.ProcessHandlerReport attribute) doc (autodoc2.utils.ItemData attribute) doc_inherited (autodoc2.utils.ItemData attribute) docstring_parser_regexes (autodoc2.config.Config attribute) DocstringRenderer (class in autodoc2.sphinx.docstring) docstrings (autodoc2.config.Config attribute) DONE (aiida.schedulers.JobState attribute) downgrade_config() (in module aiida.manage) drop_db() (aiida.manage.Postgres method) drop_dbuser() (aiida.manage.Postgres method) DUPLICATE_ITEM (autodoc2.utils.WarningSubtypes attribute) DynamicEntryPointCommandGroup (class in aiida.cmdline) E echo_critical() (in module aiida.cmdline) echo_dictionary() (in module aiida.cmdline) echo_error() (in module aiida.cmdline) echo_info() (in module aiida.cmdline) echo_report() (in module aiida.cmdline) echo_success() (in module aiida.cmdline) echo_warning() (in module aiida.cmdline) edges (aiida.tools.Graph property) element (aiida.orm.UpfData property) email (aiida.orm.User property) EmailType (class in aiida.cmdline) enable_caching() (in module aiida.manage) enabled (aiida.orm.AuthInfo property) enclosing_backticks() (autodoc2.render.myst_.MystRenderer static method) encode_input_args() (aiida.engine.Process method) encoding (autodoc2.utils.ItemData attribute) engine_command (aiida.orm.ContainerizedCode property) Entity (class in aiida.orm) entity_type (aiida.orm.Collection property) EntityExtras (class in aiida.orm) EntityTypes (class in aiida.orm) entry_point() (aiida.orm.Group method) (aiida.orm.Node method) EntryPointError EntryPointType (class in aiida.cmdline) EnumData (class in aiida.orm) EnvCache (class in autodoc2.sphinx.extension) erase() (aiida.orm.NodeRepository method) (aiida.repository.AbstractRepositoryBackend method) (aiida.repository.DiskObjectStoreRepositoryBackend method) (aiida.repository.Repository method) (aiida.repository.SandboxRepositoryBackend method) errors (autodoc2.resolve_all.AllResolveResult attribute) exception (aiida.orm.ProcessNode property) EXCEPTION_KEY (aiida.orm.ProcessNode attribute) exclude_dirs (autodoc2.config.PackageConfig attribute) exclude_external_imports (autodoc2.analysis.State attribute) exclude_files (autodoc2.config.PackageConfig attribute) exec_command_wait() (aiida.transports.Transport method) exec_command_wait_bytes() (aiida.transports.SshTransport method) (aiida.transports.Transport method) execute() (aiida.engine.FunctionProcess method) exit_code (aiida.engine.ProcessHandlerReport attribute) exit_code() (aiida.engine.ProcessSpec method) exit_codes (aiida.engine.ProcessSpec property) (aiida.parsers.Parser property) exit_codes() (aiida.engine.Process method) exit_message (aiida.orm.ProcessNode property) EXIT_MESSAGE_KEY (aiida.orm.ProcessNode attribute) exit_status (aiida.orm.ProcessNode property) EXIT_STATUS_KEY (aiida.orm.ProcessNode attribute) ExitCode (class in aiida.engine) ExitCodesNamespace (class in aiida.engine) EXPORT (aiida.common.GraphTraversalRules attribute) export() (aiida.orm.Data method) exposed_inputs() (aiida.engine.Process method) exposed_outputs() (aiida.engine.Process method) extend() (aiida.orm.List method) EXTENSION (autodoc2.render.base.RendererBase attribute) (autodoc2.render.myst_.MystRenderer attribute) (autodoc2.render.rst_.RstRenderer attribute) extrakeys() (aiida.common.DefaultFieldsAttributeDict method) F fail_with_suggestions() (aiida.cmdline.VerdiCommandGroup method) FailedError FeatureDisabled FeatureNotAvailable FILE (aiida.repository.FileType attribute) File (class in aiida.repository) file_path (autodoc2.utils.ItemData attribute) file_type (aiida.repository.File property) filename (aiida.orm.SinglefileData property) FileOrUrl (class in aiida.cmdline) filepath (aiida.manage.Config property) filepath_executable (aiida.orm.ContainerizedCode property) (aiida.orm.InstalledCode property) (aiida.orm.PortableCode property) filepaths (aiida.manage.Profile property) FileType (class in aiida.repository) final_argument_whitespace (autodoc2.sphinx.autodoc.AutodocObject attribute) (autodoc2.sphinx.docstring.DocstringRenderer attribute) (autodoc2.sphinx.summary.AutodocSummary attribute) find() (aiida.orm.Collection method) find_bandgap() (in module aiida.orm) first() (aiida.orm.LinkManager method) (aiida.orm.QueryBuilder method) first_name (aiida.orm.User property) fix_docstring_indent() (in module autodoc2.analysis) FixedFieldsAttributeDict (class in aiida.common) flatten() (aiida.repository.Repository class method) Float (class in aiida.orm) FolderData (class in aiida.orm) format() (aiida.engine.ExitCode method) format_annotation() (autodoc2.render.base.RendererBase method) format_args() (autodoc2.render.base.RendererBase method) format_base() (autodoc2.render.base.RendererBase method) format_call_graph() (in module aiida.cmdline) format_url() (aiida.manage.RabbitmqManagementClient method) from_backend_entity() (aiida.orm.Entity class method) from_dict() (aiida.orm.QueryBuilder class method) from_file() (aiida.manage.Config class method) from_git_clone (autodoc2.config.PackageConfig attribute) from_md5() (aiida.orm.CifData class method) (aiida.orm.UpfData class method) from_profile() (aiida.manage.Postgres class method) from_serialized() (aiida.repository.File class method) (aiida.repository.Repository class method) full_label (aiida.orm.AbstractCode property) (aiida.orm.Code property) (aiida.orm.InstalledCode property) (aiida.orm.PortableCode property) full_name (autodoc2.utils.ItemData attribute) FunctionProcess (class in aiida.engine) G generate_md5() (aiida.orm.CifData method) generate_summary() (autodoc2.render.base.RendererBase method) (autodoc2.render.myst_.MystRenderer method) (autodoc2.render.rst_.RstRenderer method) get() (aiida.orm.Code class method) (aiida.orm.Collection method) (aiida.orm.Entity class method) (aiida.orm.EntityExtras method) (aiida.orm.NodeAttributes method) (aiida.transports.SshTransport method) (aiida.transports.Transport method) get_all_analyser() (in module autodoc2.sphinx.utils) get_ancestors() (autodoc2.db.Database method) (autodoc2.db.InMemoryDb method) get_append_text() (aiida.orm.Code method) (aiida.orm.Computer method) get_args_info() (in module autodoc2.astroid_utils) get_array() (aiida.orm.ArrayData method) get_arraynames() (aiida.orm.ArrayData method) get_ase() (aiida.orm.CifData method) (aiida.orm.Site method) (aiida.orm.StructureData method) get_assign_annotation() (in module autodoc2.astroid_utils) get_assign_value() (in module autodoc2.astroid_utils) get_attribute() (aiida.transports.SshTransport method) (aiida.transports.Transport method) get_auth_params() (aiida.orm.AuthInfo method) get_authinfo() (aiida.orm.CalcJobNode method) (aiida.orm.Computer method) (aiida.orm.RemoteData method) get_available_port() (aiida.engine.DaemonClient class method) get_bands() (aiida.orm.BandsData method) get_builder() (aiida.engine.Process class method) (aiida.orm.AbstractCode method) get_builder_restart() (aiida.orm.CalcJobNode method) (aiida.orm.ProcessNode method) get_by_type() (autodoc2.db.Database method) (autodoc2.db.InMemoryDb method) get_cached() (aiida.orm.Collection class method) get_cell_volume() (aiida.orm.StructureData method) get_cells() (aiida.orm.TrajectoryData method) get_checkpoints() (aiida.engine.AiiDAPersister method) get_children() (autodoc2.db.Database method) (autodoc2.db.InMemoryDb method) (autodoc2.render.base.RendererBase method) get_children_names() (autodoc2.db.Database method) (autodoc2.db.InMemoryDb method) get_cif() (aiida.orm.StructureData method) (aiida.orm.TrajectoryData method) get_circus_port() (aiida.engine.DaemonClient method) get_circus_socket_directory() (aiida.engine.DaemonClient method) get_class_docstring() (in module autodoc2.astroid_utils) get_cli_options() (aiida.orm.AbstractCode class method) get_client() (aiida.engine.DaemonClient method) get_code_helper() (aiida.orm.Code class method) get_command() (aiida.cmdline.DynamicEntryPointCommandGroup method) (aiida.cmdline.VerdiCommandGroup method) get_composition() (aiida.orm.StructureData method) get_computer_label() (aiida.orm.Code method) get_configuration() (aiida.orm.Computer method) get_const_values() (in module autodoc2.astroid_utils) get_content() (aiida.orm.SinglefileData method) get_controller_endpoint() (aiida.engine.DaemonClient method) get_current_version() (in module aiida.manage) get_daemon_info() (aiida.engine.DaemonClient method) get_daemon_pid() (aiida.engine.DaemonClient method) get_database() (in module autodoc2.sphinx.utils) get_default_fields() (aiida.common.DefaultFieldsAttributeDict class method) get_default_memory_per_machine() (aiida.orm.Computer method) get_default_mpiprocs_per_machine() (aiida.orm.Computer method) get_description() (aiida.engine.InputPort method) (aiida.orm.CalcJobNode method) (aiida.orm.Code method) (aiida.orm.KpointsData method) (aiida.orm.Node method) (aiida.orm.StructureData method) get_detailed_job_info() (aiida.orm.CalcJobNode method) (aiida.schedulers.Scheduler method) get_dict() (aiida.orm.Dict method) (aiida.schedulers.JobInfo method) get_dimensionality() (aiida.orm.StructureData method) get_directory() (aiida.repository.Repository method) get_doc_parser() (autodoc2.render.base.RendererBase method) get_entry_point_from_string() (aiida.cmdline.PluginParamType method) get_entry_points() (in module aiida.plugins) get_enum() (aiida.orm.EnumData method) get_env() (aiida.engine.DaemonClient static method) get_execname() (aiida.orm.Code method) get_executable() (aiida.orm.AbstractCode method) (aiida.orm.Code method) (aiida.orm.InstalledCode method) (aiida.orm.PortableCode method) get_executable_cmdline_params() (aiida.orm.AbstractCode method) get_exit_statuses() (aiida.engine.Process class method) get_explicit_kpoints_path() (in module aiida.tools) get_export_formats() (aiida.orm.Data class method) get_feature() (aiida.schedulers.Scheduler method) get_file() (aiida.repository.Repository method) get_file_header() (in module aiida) get_file_keys() (aiida.repository.Repository method) get_formula() (aiida.orm.StructureData method) get_formulae() (aiida.orm.CifData method) get_from_string() (aiida.orm.Code class method) get_full_import_name() (in module autodoc2.astroid_utils) get_full_name() (aiida.orm.User method) get_func_docstring() (in module autodoc2.astroid_utils) get_git_clone() (in module autodoc2.sphinx.extension) get_group() (aiida.tools.GroupPath method) get_importer() (aiida.engine.CalcJob class method) get_index_from_stepid() (aiida.orm.TrajectoryData method) get_info() (aiida.repository.AbstractRepositoryBackend method) (aiida.repository.DiskObjectStoreRepositoryBackend method) (aiida.repository.SandboxRepositoryBackend method) get_input_plugin_name() (aiida.orm.Code method) get_ipc_endpoint() (aiida.engine.DaemonClient method) get_item() (autodoc2.db.Database method) (autodoc2.db.InMemoryDb method) (autodoc2.render.base.RendererBase method) get_items_like() (autodoc2.db.Database method) (autodoc2.db.InMemoryDb method) get_iterarrays() (aiida.orm.ArrayData method) get_job_id() (aiida.orm.CalcJobNode method) get_jobs() (aiida.schedulers.Scheduler method) get_jobs_list() (aiida.engine.JobManager method) get_kind() (aiida.orm.StructureData method) get_kind_names() (aiida.orm.StructureData method) get_kpoints() (aiida.orm.KpointsData method) get_kpoints_mesh() (aiida.orm.KpointsData method) get_kpoints_path() (in module aiida.tools) get_last_job_info() (aiida.orm.CalcJobNode method) get_launch_queue_name() (in module aiida.manage) get_list() (aiida.orm.List method) get_loader() (in module aiida.orm) get_local_executable() (aiida.orm.Code method) get_manager() (in module aiida.manage) get_many() (aiida.orm.EntityExtras method) (aiida.orm.NodeAttributes method) get_member() (aiida.orm.EnumData method) get_message_exchange_name() (in module aiida.manage) get_metadata() (aiida.orm.AuthInfo method) get_metavar() (aiida.cmdline.LazyChoice method) (aiida.cmdline.MultipleValueParamType method) get_minimum_job_poll_interval() (aiida.orm.Computer method) get_minimum_update_interval() (aiida.engine.JobsList method) get_missing_message() (aiida.cmdline.LazyChoice method) (aiida.cmdline.PluginParamType method) get_mode() (aiida.transports.Transport method) get_module_all() (in module autodoc2.astroid_utils) get_mpirun_command() (aiida.orm.Computer method) get_name() (autodoc2.resolve_all.AllResolver method) get_name_from_quantum_numbers() (aiida.tools.RealhydrogenOrbital class method) get_node_by_label() (aiida.orm.LinkManager method) get_numprocesses() (aiida.engine.DaemonClient method) get_object() (aiida.orm.NodeRepository method) (aiida.repository.Repository method) get_object_content() (aiida.orm.NodeRepository method) (aiida.repository.AbstractRepositoryBackend method) (aiida.repository.Repository method) get_object_hash() (aiida.repository.AbstractRepositoryBackend method) (aiida.repository.DiskObjectStoreRepositoryBackend method) get_object_loader() (in module aiida.engine) get_option() (aiida.manage.Config method) (aiida.manage.Profile method) (aiida.orm.CalcJobNode method) (in module aiida.manage) get_option_names() (in module aiida.manage) get_options() (aiida.manage.Config method) (aiida.orm.CalcJobNode method) (aiida.orm.OrmEntityLoader class method) get_or_create() (aiida.orm.CifData class method) (aiida.orm.UpfData class method) get_or_create_db_record() (aiida.engine.FunctionProcess class method) (aiida.engine.Process class method) get_or_create_group() (aiida.tools.GroupPath method) get_orbital_dict() (aiida.tools.Orbital method) get_orbitals() (aiida.orm.OrbitalData method) get_outputs() (aiida.engine.BaseRestartWorkChain method) get_outputs_for_parsing() (aiida.parsers.Parser method) get_overloads() (autodoc2.db.Database method) (autodoc2.db.InMemoryDb method) get_parent_calc() (aiida.engine.Process method) get_parser_class() (aiida.orm.CalcJobNode method) get_pdos() (aiida.orm.ProjectionData method) get_positions() (aiida.orm.TrajectoryData method) get_possibilities() (aiida.cmdline.PluginParamType method) get_prepend_cmdline_params() (aiida.orm.AbstractCode method) (aiida.orm.ContainerizedCode method) get_prepend_text() (aiida.orm.Code method) (aiida.orm.Computer method) get_process_checkpoints() (aiida.engine.AiiDAPersister method) get_process_future() (aiida.engine.Runner method) get_process_handlers() (aiida.engine.BaseRestartWorkChain class method) get_process_handlers_by_priority() (aiida.engine.BaseRestartWorkChain method) get_profile() (aiida.manage.Config method) get_progress_reporter() (in module aiida.common) get_projections() (aiida.orm.ProjectionData method) get_property() (aiida.orm.Computer method) get_provenance_inputs_iterator() (aiida.engine.Process method) get_pubsub_endpoint() (aiida.engine.DaemonClient method) get_pymatgen() (aiida.orm.StructureData method) get_pymatgen_molecule() (aiida.orm.StructureData method) get_pymatgen_structure() (aiida.orm.StructureData method) get_quantum_numbers_from_name() (aiida.tools.RealhydrogenOrbital class method) get_query_builder() (aiida.orm.OrmEntityLoader class method) get_query_classes() (aiida.orm.OrmEntityLoader class method) get_query_type_from_type_string() (in module aiida.orm) get_raw() (aiida.orm.Kind method) (aiida.orm.Site method) get_reference_bandsdata() (aiida.orm.ProjectionData method) get_remote_computer() (aiida.orm.Code method) get_remote_exec_path() (aiida.orm.Code method) get_remote_path() (aiida.orm.RemoteData method) get_remote_workdir() (aiida.orm.CalcJobNode method) get_resolved_all() (autodoc2.resolve_all.AllResolver method) get_results() (aiida.orm.CalcJobResultManager method) get_retrieve_list() (aiida.orm.CalcJobNode method) get_retrieve_temporary_list() (aiida.orm.CalcJobNode method) get_retrieved_node() (aiida.orm.CalcJobNode method) get_return_annotation() (in module autodoc2.astroid_utils) get_rmq_url() (aiida.manage.Profile method) (in module aiida.manage) get_safe_open_interval() (aiida.transports.Transport method) get_scheduler() (aiida.orm.Computer method) get_scheduler_lastchecktime() (aiida.orm.CalcJobNode method) get_scheduler_state() (aiida.orm.CalcJobNode method) get_scheduler_stderr() (aiida.orm.CalcJobNode method) get_scheduler_stdout() (aiida.orm.CalcJobNode method) get_shape() (aiida.orm.ArrayData method) get_shebang() (aiida.orm.Computer method) get_short_doc() (aiida.schedulers.Scheduler class method) (aiida.transports.Transport class method) get_short_name() (aiida.orm.User method) get_site_kindnames() (aiida.orm.StructureData method) get_spacegroup_numbers() (aiida.orm.CifData method) get_state() (aiida.orm.CalcJobNode method) get_state_classes() (aiida.engine.CalcJob class method) get_stats_endpoint() (aiida.engine.DaemonClient method) get_status() (aiida.engine.DaemonClient method) get_step_data() (aiida.orm.TrajectoryData method) get_step_structure() (aiida.orm.TrajectoryData method) get_stepids() (aiida.orm.TrajectoryData method) get_strict_version() (in module aiida) get_structure() (aiida.orm.CifData method) (aiida.orm.TrajectoryData method) get_submit_script() (aiida.schedulers.Scheduler method) get_symbols_set() (aiida.orm.StructureData method) get_symbols_string() (aiida.orm.Kind method) get_task_exchange_name() (in module aiida.manage) get_tcp_endpoint() (aiida.engine.DaemonClient method) get_times() (aiida.orm.TrajectoryData method) get_tot_num_mpiprocs() (aiida.schedulers.JobResource method) (aiida.schedulers.NodeNumberJobResource method) (aiida.schedulers.ParEnvJobResource method) get_transport() (aiida.orm.AuthInfo method) (aiida.orm.CalcJobNode method) (aiida.orm.Computer method) get_transport_class() (aiida.orm.Computer method) get_type() (autodoc2.db.Database method) (autodoc2.db.InMemoryDb method) get_type_string_from_class() (in module aiida.orm) get_upf_family_names() (aiida.orm.UpfData method) get_upf_group() (aiida.orm.UpfData class method) get_upf_groups() (aiida.orm.UpfData class method) get_url() (aiida.cmdline.FileOrUrl method) get_use_cache() (in module aiida.manage) get_use_double_quotes() (aiida.orm.Code method) (aiida.orm.Computer method) get_used_tags() (aiida.orm.QueryBuilder method) get_valid_arguments() (aiida.cmdline.PluginParamType method) get_valid_auth_params() (aiida.transports.Transport class method) get_valid_fields() (aiida.common.FixedFieldsAttributeDict class method) get_valid_keys() (aiida.schedulers.JobResource class method) (aiida.schedulers.NodeNumberJobResource class method) get_velocities() (aiida.orm.TrajectoryData method) get_version() (in module aiida) get_version_info() (aiida.plugins.PluginVersionProvider method) get_workdir() (aiida.orm.AuthInfo method) (aiida.orm.Computer method) get_worker_info() (aiida.engine.DaemonClient method) get_x() (aiida.orm.XyData method) get_y() (aiida.orm.XyData method) getcwd() (aiida.transports.SshTransport method) (aiida.transports.Transport method) getfile() (aiida.orm.RemoteData method) (aiida.transports.SshTransport method) (aiida.transports.Transport method) gettree() (aiida.transports.SshTransport method) (aiida.transports.Transport method) GIT_CLONE_FAILED (autodoc2.utils.WarningSubtypes attribute) glob() (aiida.orm.NodeRepository method) (aiida.transports.Transport method) glob0() (aiida.transports.Transport method) glob1() (aiida.transports.Transport method) global_only (aiida.manage.Option property) gotocomputer_command() (aiida.transports.SshTransport method) (aiida.transports.Transport method) Graph (class in aiida.tools) GraphTraversalRule (in module aiida.common) GraphTraversalRules (class in aiida.common) graphviz (aiida.tools.Graph property) GROUP (aiida.orm.EntityTypes attribute) Group (class in aiida.orm) group() (aiida.cmdline.VerdiCommandGroup method) group_ids (aiida.tools.GroupPath property) GROUP_NODE (aiida.orm.EntityTypes attribute) GroupEntityLoader (class in aiida.orm) GroupFactory() (in module aiida.plugins) GroupNotFoundError GroupNotUniqueError GroupParamType (class in aiida.cmdline) GroupPath (class in aiida.tools) groups (aiida.cmdline.PluginParamType property) H handle_continue_exception() (aiida.manage.ProcessLauncher static method) handle_invalid() (aiida.manage.Config method) has_atomic_sites (aiida.orm.CifData property) has_attached_hydrogens (aiida.orm.CifData property) has_content (autodoc2.sphinx.autodoc.AutodocObject attribute) (autodoc2.sphinx.docstring.DocstringRenderer attribute) (autodoc2.sphinx.summary.AutodocSummary attribute) has_magic() (aiida.transports.Transport method) has_object() (aiida.repository.AbstractRepositoryBackend method) (aiida.repository.Repository method) has_objects() (aiida.repository.AbstractRepositoryBackend method) (aiida.repository.DiskObjectStoreRepositoryBackend method) (aiida.repository.SandboxRepositoryBackend method) has_partial_occupancies (aiida.orm.CifData property) has_potential_ambiguity (aiida.cmdline.PluginParamType property) has_pycifrw() (in module aiida.orm) has_undefined_atomic_sites (aiida.orm.CifData property) has_unknown_species (aiida.orm.CifData property) has_vacancies (aiida.orm.Kind property) (aiida.orm.StructureData property) hash (autodoc2.sphinx.extension.EnvCache attribute) hash() (aiida.orm.NodeRepository method) (aiida.repository.Repository method) HashingError hidden (aiida.orm.Code property) HIDDEN_KEY (aiida.orm.Code attribute) hidden_objects (autodoc2.config.Config attribute) hidden_regexes (autodoc2.config.Config attribute) hide() (aiida.orm.Code method) host_for_psycopg2 (aiida.manage.Postgres property) hostname (aiida.orm.Computer property) HostnameType (class in aiida.cmdline) I id (aiida.orm.Entity property) IdentifierParamType (class in aiida.cmdline) iglob() (aiida.transports.Transport method) image_name (aiida.orm.ContainerizedCode property) IMMIGRATED_KEY (aiida.orm.CalcJobNode attribute) importfile() (aiida.orm.Data method) ImportGroup (class in aiida.orm) imports (autodoc2.utils.ItemData attribute) importstring() (aiida.orm.Data method) IncompatibleStorageSchema increase_workers() (aiida.engine.DaemonClient method) index() (aiida.orm.List method) index_template (autodoc2.config.Config attribute) infer_identifier_type() (aiida.orm.OrmEntityLoader class method) inherited (autodoc2.utils.ItemData attribute) init() (aiida.engine.Process method) initialise() (aiida.repository.AbstractRepositoryBackend method) (aiida.repository.DiskObjectStoreRepositoryBackend method) (aiida.repository.Repository method) (aiida.repository.SandboxRepositoryBackend method) initialize() (aiida.orm.ArrayData method) (aiida.orm.Entity method) InMemoryDb (class in autodoc2.db) INPUT_CALC (aiida.common.LinkType attribute) INPUT_PORT_TYPE (aiida.engine.ProcessSpec attribute) INPUT_WORK (aiida.common.LinkType attribute) InputPort (class in aiida.engine) inputs (aiida.engine.ProcessSpec property) (aiida.orm.CalculationNode property) (aiida.orm.WorkflowNode property) inputs() (aiida.orm.QueryBuilder method) InputValidationError insert() (aiida.orm.List method) inspect_process() (aiida.engine.BaseRestartWorkChain method) InstalledCode (class in aiida.orm) instantiate_process() (aiida.engine.Runner method) institution (aiida.orm.User property) Int (class in aiida.orm) IntegrityError InternalError interrupt() (aiida.engine.InterruptableFuture method) interruptable_task() (in module aiida.engine) InterruptableFuture (class in aiida.engine) invalidates_cache (aiida.engine.ExitCode attribute) InvalidEntryPointTypeError InvalidOperation InvalidPath is_alloy (aiida.orm.Kind property) (aiida.orm.StructureData property) is_closed() (aiida.engine.Runner method) is_configured (aiida.orm.Computer property) is_connected (aiida.manage.RabbitmqManagementClient property) is_constructor() (in module autodoc2.astroid_utils) is_daemon_runner (aiida.engine.Runner property) is_daemon_running (aiida.engine.DaemonClient property) is_decorated_as_singledispatch_register() (in module autodoc2.astroid_utils) is_decorated_with_overload() (in module autodoc2.astroid_utils) is_decorated_with_property() (in module autodoc2.astroid_utils) is_decorated_with_property_setter() (in module autodoc2.astroid_utils) is_decorated_with_singledispatch() (in module autodoc2.astroid_utils) is_dir() (aiida.repository.File method) is_empty (aiida.orm.Group property) (aiida.orm.RemoteData property) is_empty() (aiida.repository.Repository method) is_excepted (aiida.orm.ProcessNode property) is_exception() (in module autodoc2.astroid_utils) is_failed (aiida.orm.ProcessNode property) is_file() (aiida.repository.File method) is_finished (aiida.orm.ProcessNode property) is_finished_ok (aiida.orm.ProcessNode property) is_hidden (aiida.orm.AbstractCode property) is_hidden() (autodoc2.render.base.RendererBase method) is_imported (aiida.orm.CalcJobNode property) is_initialised (aiida.repository.AbstractRepositoryBackend property) (aiida.repository.DiskObjectStoreRepositoryBackend property) (aiida.repository.Repository property) (aiida.repository.SandboxRepositoryBackend property) is_killed (aiida.orm.ProcessNode property) is_local() (aiida.orm.Code method) is_module_deprecated() (autodoc2.render.base.RendererBase method) is_open (aiida.transports.Transport property) is_overload_decorator() (in module autodoc2.astroid_utils) is_process_function() (in module aiida.engine) is_process_handler() (aiida.engine.BaseRestartWorkChain class method) is_property_decorator() (in module autodoc2.astroid_utils) is_readable_byte_stream() (aiida.repository.AbstractRepositoryBackend static method) is_singledispatch_decorator() (in module autodoc2.astroid_utils) is_stored (aiida.orm.Entity property) is_terminated (aiida.orm.ProcessNode property) is_test_profile (aiida.manage.Profile property) is_user_configured() (aiida.orm.Computer method) is_user_defined() (aiida.orm.Group method) is_user_enabled() (aiida.orm.Computer method) is_valid_cache (aiida.orm.Node property) is_valid_cache() (aiida.engine.Process class method) is_verbose() (in module aiida.cmdline) is_virtual (aiida.tools.GroupPath property) isdir() (aiida.transports.SshTransport method) (aiida.transports.Transport method) isfile() (aiida.transports.SshTransport method) (aiida.transports.Transport method) ItemData (class in autodoc2.utils) items() (aiida.orm.Dict method) (aiida.orm.EntityExtras method) (aiida.orm.NodeAttributes method) iter_object_streams() (aiida.repository.AbstractRepositoryBackend method) (aiida.repository.DiskObjectStoreRepositoryBackend method) (aiida.repository.SandboxRepositoryBackend method) iterall() (aiida.orm.QueryBuilder method) iterdict() (aiida.orm.QueryBuilder method) J job_manager (aiida.engine.Runner property) job_resource_class() (aiida.schedulers.Scheduler method) JobInfo (class in aiida.schedulers) JobManager (class in aiida.engine) JobResource (class in aiida.schedulers) JobsList (class in aiida.engine) JobState (class in aiida.schedulers) JobTemplate (class in aiida.schedulers) JsonableData (class in aiida.orm) K key (aiida.repository.File property) (aiida.tools.GroupPath property) KEY_DEFAULT_PROFILE (aiida.manage.Config attribute) KEY_DEFAULT_USER_EMAIL (aiida.manage.Profile attribute) KEY_EXTRA_CLEANED (aiida.orm.RemoteData attribute) key_format (aiida.repository.AbstractRepositoryBackend property) (aiida.repository.DiskObjectStoreRepositoryBackend property) (aiida.repository.SandboxRepositoryBackend property) KEY_IDENTIFIER (aiida.orm.EnumData attribute) KEY_NAME (aiida.orm.EnumData attribute) KEY_OPTIONS (aiida.manage.Config attribute) (aiida.manage.Profile attribute) KEY_PROCESS (aiida.manage.Profile attribute) KEY_PROCESS_BACKEND (aiida.manage.Profile attribute) KEY_PROCESS_CONFIG (aiida.manage.Profile attribute) KEY_PROFILES (aiida.manage.Config attribute) KEY_SCHEMA (aiida.manage.Config attribute) KEY_STORAGE (aiida.manage.Profile attribute) KEY_STORAGE_BACKEND (aiida.manage.Profile attribute) KEY_STORAGE_CONFIG (aiida.manage.Profile attribute) KEY_TEST_PROFILE (aiida.manage.Profile attribute) KEY_UUID (aiida.manage.Profile attribute) KEY_VALUE (aiida.orm.EnumData attribute) KEY_VERSION (aiida.manage.Config attribute) KEY_VERSION_CURRENT (aiida.manage.Config attribute) KEY_VERSION_OLDEST_COMPATIBLE (aiida.manage.Config attribute) keys() (aiida.orm.Dict method) (aiida.orm.EntityExtras method) (aiida.orm.NodeAttributes method) kill() (aiida.engine.Process method) (aiida.schedulers.Scheduler method) Kind (class in aiida.orm) kind_name (aiida.orm.Site property) kinds (aiida.orm.StructureData property) KpointsData (class in aiida.orm) L label (aiida.orm.AbstractCode property) (aiida.orm.Computer property) (aiida.orm.Group property) (aiida.orm.Node property) label_ambiguity_breaker (aiida.orm.OrmEntityLoader attribute) labels (aiida.orm.KpointsData property) LabelStringType (class in aiida.cmdline) last_name (aiida.orm.User property) last_updated (aiida.engine.JobsList property) LazyChoice (class in aiida.cmdline) levelname (aiida.orm.Log property) LicensingException limit() (aiida.orm.QueryBuilder method) LINK (aiida.orm.EntityTypes attribute) link_label (aiida.orm.LinkPair attribute) (aiida.orm.LinkTriple attribute) link_label_retrieved (aiida.engine.CalcJob attribute) (aiida.orm.CalcJobNode property) link_type (aiida.orm.LinkPair attribute) (aiida.orm.LinkTriple attribute) LinkManager (class in aiida.orm) LinkPair (class in aiida.orm) LinkTriple (class in aiida.orm) LinkType (class in aiida.common) List (class in aiida.orm) list_commands() (aiida.cmdline.DynamicEntryPointCommandGroup method) list_for_plugin() (aiida.orm.Code class method) list_items() (in module autodoc2.cli) list_object_names() (aiida.orm.NodeRepository method) (aiida.repository.Repository method) list_objects() (aiida.orm.NodeRepository method) (aiida.repository.AbstractRepositoryBackend method) (aiida.repository.DiskObjectStoreRepositoryBackend method) (aiida.repository.Repository method) (aiida.repository.SandboxRepositoryBackend method) list_options() (aiida.cmdline.DynamicEntryPointCommandGroup method) listdir() (aiida.orm.RemoteData method) (aiida.transports.SshTransport method) (aiida.transports.Transport method) listdir_withattributes() (aiida.orm.RemoteData method) (aiida.transports.Transport method) load_checkpoint() (aiida.engine.AiiDAPersister method) load_code() (in module aiida.orm) load_computer() (in module aiida.orm) load_config() (in module autodoc2.sphinx.utils) load_entity() (aiida.orm.OrmEntityLoader class method) (in module aiida.orm) load_entry_point() (in module aiida.plugins) load_entry_point_from_string() (in module aiida.plugins) load_from_dict() (aiida.schedulers.JobInfo class method) load_from_serialized() (aiida.schedulers.JobInfo class method) load_group() (in module aiida.orm) load_instance_state() (aiida.engine.Process method) (aiida.engine.WorkChain method) load_ipython_extension() (in module aiida) load_node() (in module aiida.orm) load_node_class() (in module aiida.orm) load_object() (aiida.engine.ObjectLoader method) LoadingEntryPointError LockedProfileError LockingProfileError LOG (aiida.orm.EntityTypes attribute) Log (class in aiida.orm) logger (aiida.engine.JobsList property) (aiida.orm.Computer property) (aiida.orm.Node property) (aiida.orm.ProcessNode property) (aiida.parsers.Parser property) (aiida.plugins.PluginVersionProvider property) (aiida.schedulers.Scheduler property) (aiida.transports.Transport property) LOGGER (in module autodoc2.sphinx.utils) loggername (aiida.orm.Log property) loglevel (aiida.engine.DaemonClient property) loop (aiida.engine.Runner property) lstat() (aiida.transports.SshTransport method) M MachineInfo (class in aiida.schedulers) main_app() (in module autodoc2.cli) maintain() (aiida.repository.AbstractRepositoryBackend method) (aiida.repository.DiskObjectStoreRepositoryBackend method) (aiida.repository.SandboxRepositoryBackend method) makedirs() (aiida.transports.SshTransport method) (aiida.transports.Transport method) ManagementApiConnectionError (class in aiida.manage) mass (aiida.orm.Kind property) md5sum (aiida.orm.UpfData property) message (aiida.engine.ExitCode attribute) (aiida.orm.Log property) metadata (aiida.engine.Process property) (aiida.orm.Computer property) (aiida.orm.Log property) (aiida.orm.NodeRepository property) METADATA_KEY (aiida.engine.ProcessSpec attribute) metadata_key (aiida.engine.ProcessSpec property) METADATA_OPTIONS_KEY (aiida.engine.ProcessSpec attribute) MIGRATIONS (in module aiida.manage) MISSING_MODULE (autodoc2.utils.WarningSubtypes attribute) MissingConfigurationError MissingEntryPointError mkdir() (aiida.transports.SshTransport method) (aiida.transports.Transport method) ModificationNotAllowed module aiida aiida.cmdline aiida.common aiida.engine aiida.manage aiida.orm aiida.parsers aiida.plugins aiida.repository aiida.schedulers aiida.tools aiida.transports autodoc2 autodoc2.analysis autodoc2.astroid_utils autodoc2.cli autodoc2.config autodoc2.db autodoc2.render autodoc2.render.base autodoc2.render.myst_ autodoc2.render.rst_ autodoc2.resolve_all autodoc2.sphinx autodoc2.sphinx.autodoc autodoc2.sphinx.docstring autodoc2.sphinx.extension autodoc2.sphinx.summary autodoc2.sphinx.utils autodoc2.utils module (autodoc2.config.PackageConfig attribute) module_all_regexes (autodoc2.config.Config attribute) module_summary (autodoc2.config.Config attribute) MpirunCommandParamType (class in aiida.cmdline) mtime (aiida.orm.Comment property) (aiida.orm.Node property) MultipleEntryPointError MultipleObjectsError MultipleValueParamType (class in aiida.cmdline) MystRenderer (class in autodoc2.render.myst_) N n (aiida.common.ProgressReporterAbstract property) name (aiida.cmdline.AbsolutePathParamType attribute) (aiida.cmdline.CalculationParamType attribute) (aiida.cmdline.CodeParamType attribute) (aiida.cmdline.ComputerParamType attribute) (aiida.cmdline.ConfigOptionParamType attribute) (aiida.cmdline.DataParamType attribute) (aiida.cmdline.EmailType attribute) (aiida.cmdline.EntryPointType attribute) (aiida.cmdline.FileOrUrl attribute) (aiida.cmdline.GroupParamType attribute) (aiida.cmdline.HostnameType attribute) (aiida.cmdline.LabelStringType attribute) (aiida.cmdline.LazyChoice attribute) (aiida.cmdline.MpirunCommandParamType attribute) (aiida.cmdline.NodeParamType attribute) (aiida.cmdline.NonEmptyStringParamType attribute) (aiida.cmdline.PathOrUrl attribute) (aiida.cmdline.PluginParamType attribute) (aiida.cmdline.ProcessParamType attribute) (aiida.cmdline.ProfileParamType attribute) (aiida.cmdline.ShebangParamType attribute) (aiida.cmdline.UserParamType attribute) (aiida.cmdline.WorkflowParamType attribute) (aiida.manage.Option property) (aiida.manage.Profile property) (aiida.orm.EnumData property) (aiida.orm.Kind property) (aiida.repository.File property) NAME_NOT_FOUND (autodoc2.utils.WarningSubtypes attribute) name_stack (autodoc2.analysis.State attribute) nested() (aiida.orm.LinkManager method) nested_parse_generated() (in module autodoc2.sphinx.utils) new() (aiida.orm.BaseType method) next() (aiida.orm.LinkManager method) no_index (autodoc2.config.Config attribute) no_index() (autodoc2.render.base.RendererBase method) NoAllError node (aiida.engine.CalcJob property) (aiida.engine.Process property) (aiida.engine.WorkChain property) (aiida.orm.CalcJobResultManager property) (aiida.orm.Comment property) NODE (aiida.orm.EntityTypes attribute) node (aiida.orm.LinkTriple attribute) (aiida.parsers.Parser property) Node (class in aiida.orm) node_type (aiida.orm.Node property) NodeAttributes (class in aiida.orm) NodeEntityLoader (class in aiida.orm) NodeLinksManager (class in aiida.orm) NodeNumberJobResource (class in aiida.schedulers) NodeParamType (class in aiida.cmdline) NodeRepository (class in aiida.orm) nodes (aiida.orm.Group property) (aiida.tools.Graph property) NoGroupsInPathError non_db (aiida.engine.WithNonDb property) non_db_explicitly_set (aiida.engine.WithNonDb property) NonEmptyStringParamType (class in aiida.cmdline) normalize() (aiida.transports.SshTransport method) (aiida.transports.Transport method) normalize_email() (aiida.orm.User static method) NotExistent NotExistentAttributeError NotExistentKeyError NumericType (class in aiida.orm) numsites (aiida.orm.TrajectoryData property) numsteps (aiida.orm.TrajectoryData property) O obj (aiida.orm.JsonableData property) ObjectLoader (class in aiida.engine) ObjectMissingError objects (aiida.repository.File property) objects() (aiida.orm.Entity method) offset() (aiida.orm.QueryBuilder method) OLDEST_COMPATIBLE_CONFIG_VERSION (in module aiida.manage) on_create() (aiida.engine.Process method) on_entered() (aiida.engine.Process method) on_except() (aiida.engine.Process method) on_exiting() (aiida.engine.WorkChain method) on_finish() (aiida.engine.Process method) on_output_emitting() (aiida.engine.Process method) on_paused() (aiida.engine.Process method) on_playing() (aiida.engine.Process method) on_run() (aiida.engine.WorkChain method) on_terminated() (aiida.engine.BaseRestartWorkChain method) (aiida.engine.CalcJob method) (aiida.engine.Process method) on_wait() (aiida.engine.WorkChain method) one() (aiida.orm.LinkManager method) (aiida.orm.QueryBuilder method) only_if_daemon_running() (in module aiida.cmdline) open() (aiida.orm.NodeRepository method) (aiida.orm.SinglefileData method) (aiida.repository.AbstractRepositoryBackend method) (aiida.repository.DiskObjectStoreRepositoryBackend method) (aiida.repository.Repository method) (aiida.repository.SandboxRepositoryBackend method) (aiida.transports.SshTransport method) (aiida.transports.Transport method) Option (class in aiida.manage) option_spec (autodoc2.sphinx.autodoc.AutodocObject attribute) (autodoc2.sphinx.docstring.DocstringRenderer attribute) (autodoc2.sphinx.summary.AutodocSummary attribute) optional_arguments (autodoc2.sphinx.docstring.DocstringRenderer attribute) (autodoc2.sphinx.summary.AutodocSummary attribute) options (aiida.engine.CalcJob property) (aiida.manage.Config property) (aiida.manage.Profile property) options_key (aiida.engine.ProcessSpec property) Orbital (class in aiida.tools) OrbitalData (class in aiida.orm) OrbitalFactory() (in module aiida.plugins) order_by() (aiida.orm.QueryBuilder method) OrderSpecifier() (in module aiida.orm) orm_base_class() (aiida.orm.CalculationEntityLoader method) (aiida.orm.CodeEntityLoader method) (aiida.orm.ComputerEntityLoader method) (aiida.orm.GroupEntityLoader method) (aiida.orm.NodeEntityLoader method) (aiida.orm.OrmEntityLoader method) orm_class_loader (aiida.cmdline.CalculationParamType property) (aiida.cmdline.CodeParamType property) (aiida.cmdline.ComputerParamType property) (aiida.cmdline.DataParamType property) (aiida.cmdline.GroupParamType property) (aiida.cmdline.IdentifierParamType property) (aiida.cmdline.NodeParamType property) (aiida.cmdline.ProcessParamType property) (aiida.cmdline.WorkflowParamType property) OrmEntityLoader (class in aiida.orm) out() (aiida.engine.Process method) (aiida.parsers.Parser method) out_many() (aiida.engine.Process method) output_dir (autodoc2.config.Config attribute) OUTPUT_PORT_TYPE (aiida.engine.CalcJobProcessSpec attribute) OutputParsingError OutputPort (in module aiida.engine) outputs (aiida.engine.ProcessSpec property) (aiida.orm.CalculationNode property) (aiida.orm.WorkflowNode property) (aiida.parsers.Parser property) outputs() (aiida.orm.QueryBuilder method) override_log_level() (in module aiida.common) P package_name (autodoc2.analysis.State attribute) PackageConfig (class in autodoc2.config) packages (autodoc2.config.Config attribute) PARALLEL (aiida.common.CodeRunMode attribute) parent (aiida.tools.GroupPath property) parents() (aiida.orm.QueryBuilder method) ParEnvJobResource (class in aiida.schedulers) parse() (aiida.engine.CalcJob method) (aiida.orm.CifData method) (aiida.parsers.Parser method) parse_entry_point() (in module aiida.plugins) parse_from_node() (aiida.parsers.Parser class method) parse_option() (in module aiida.manage) parse_output() (aiida.schedulers.Scheduler method) parse_remote_data() (aiida.engine.CalcJobImporter static method) parse_retrieved_output() (aiida.engine.CalcJob method) parse_scheduler_output() (aiida.engine.CalcJob method) parse_sshconfig() (in module aiida.transports) Parser (class in aiida.parsers) parser_options() (in module autodoc2.sphinx.docstring) ParserFactory() (in module aiida.plugins) PARSING (aiida.common.CalcJobState attribute) parsing_context() (in module autodoc2.sphinx.docstring) ParsingError pass_to_parser (aiida.engine.CalcJobOutputPort property) PastException (class in aiida.engine) path (aiida.tools.GroupPath property) (autodoc2.config.PackageConfig attribute) path_exists() (aiida.transports.SshTransport method) (aiida.transports.Transport method) path_list (aiida.tools.GroupPath property) PathOrUrl (class in aiida.cmdline) pause() (aiida.orm.ProcessNode method) paused (aiida.orm.ProcessNode property) pbc (aiida.orm.KpointsData property) (aiida.orm.StructureData property) persister (aiida.engine.Runner property) pk (aiida.orm.Entity property) plugin_version_provider (aiida.engine.Runner property) PluginInternalError PluginParamType (class in aiida.cmdline) PluginVersionProvider (class in aiida.plugins) pop() (aiida.orm.List method) port_for_psycopg2 (aiida.manage.Postgres property) PORT_NAMESPACE_SEPARATOR (in module aiida.engine) PORT_NAMESPACE_TYPE (aiida.engine.ProcessSpec attribute) PortableCode (class in aiida.orm) PortNamespace (class in aiida.engine) ports (aiida.engine.ProcessSpec property) position (aiida.orm.Site property) Postgres (class in aiida.manage) prepare_for_submission() (aiida.engine.CalcJob method) prepend_text (aiida.orm.AbstractCode property) preprocess_resources() (aiida.schedulers.Scheduler class method) presubmit() (aiida.engine.CalcJob method) PROCESS (aiida.engine.AwaitableTarget attribute) Process (class in aiida.engine) Process.SaveKeys (class in aiida.engine) process_class (aiida.engine.BaseRestartWorkChain property) (aiida.engine.FunctionProcess property) (aiida.engine.ProcessBuilder property) (aiida.orm.ProcessNode property) process_control_backend (aiida.manage.Profile property) process_control_config (aiida.manage.Profile property) process_handler() (in module aiida.engine) process_label (aiida.orm.ProcessNode property) PROCESS_LABEL_KEY (aiida.orm.ProcessNode attribute) PROCESS_PAUSED_KEY (aiida.orm.ProcessNode attribute) process_state (aiida.orm.ProcessNode property) PROCESS_STATE_KEY (aiida.orm.ProcessNode attribute) process_status (aiida.orm.ProcessNode property) PROCESS_STATUS_KEY (aiida.orm.ProcessNode attribute) process_type (aiida.orm.Node property) ProcessBuilder (class in aiida.engine) ProcessBuilderNamespace (class in aiida.engine) ProcessFuture (class in aiida.engine) ProcessHandlerReport (class in aiida.engine) ProcessLauncher (class in aiida.manage) ProcessNode (class in aiida.orm) ProcessParamType (class in aiida.cmdline) ProcessSpec (class in aiida.engine) profile (aiida.engine.DaemonClient property) Profile (class in aiida.manage) profile_names (aiida.manage.Config property) ProfileConfigurationError ProfileParamType (class in aiida.cmdline) profiles (aiida.manage.Config property) ProgressReporterAbstract (class in aiida.common) ProjectionData (class in aiida.orm) properties (autodoc2.utils.ItemData attribute) PROPERTY_MINIMUM_SCHEDULER_POLL_INTERVAL (aiida.orm.Computer attribute) PROPERTY_MINIMUM_SCHEDULER_POLL_INTERVAL__DEFAULT (aiida.orm.Computer attribute) PROPERTY_SHEBANG (aiida.orm.Computer attribute) PROPERTY_TYPE (in module autodoc2.utils) PROPERTY_WORKDIR (aiida.orm.AuthInfo attribute) (aiida.orm.Computer attribute) pstate_node_styles() (in module aiida.tools) put() (aiida.transports.SshTransport method) (aiida.transports.Transport method) put_object_from_bytes() (aiida.orm.NodeRepository method) put_object_from_file() (aiida.orm.NodeRepository method) (aiida.repository.AbstractRepositoryBackend method) (aiida.repository.Repository method) put_object_from_filelike() (aiida.orm.NodeRepository method) (aiida.repository.AbstractRepositoryBackend method) (aiida.repository.Repository method) put_object_from_tree() (aiida.orm.NodeRepository method) (aiida.repository.Repository method) putfile() (aiida.transports.SshTransport method) (aiida.transports.Transport method) puttree() (aiida.transports.SshTransport method) (aiida.transports.Transport method) pycifrw_from_cif() (in module aiida.orm) Q query() (aiida.orm.Collection method) QueryBuilder (class in aiida.orm) queryhelp (aiida.orm.QueryBuilder property) QUEUED (aiida.schedulers.JobState attribute) QUEUED_HELD (aiida.schedulers.JobState attribute) R RabbitmqManagementClient (class in aiida.manage) range (autodoc2.utils.ItemData attribute) read() (autodoc2.db.InMemoryDb class method) read_cif() (aiida.orm.CifData static method) RealhydrogenOrbital (class in aiida.tools) reciprocal_cell (aiida.orm.KpointsData property) recurse_ancestors() (aiida.tools.Graph method) recurse_descendants() (aiida.tools.Graph method) relabel() (aiida.orm.Code method) REMOTE_WORKDIR_KEY (aiida.orm.CalcJobNode attribute) RemoteData (class in aiida.orm) RemoteOperationError RemoteStashData (class in aiida.orm) RemoteStashFolderData (class in aiida.orm) remove() (aiida.orm.List method) (aiida.transports.SshTransport method) (aiida.transports.Transport method) (autodoc2.db.Database method) (autodoc2.db.InMemoryDb method) remove_nodes() (aiida.orm.Group method) remove_profile() (aiida.manage.Config method) rename() (aiida.transports.SshTransport method) (aiida.transports.Transport method) render_attribute() (autodoc2.render.myst_.MystRenderer method) (autodoc2.render.rst_.RstRenderer method) render_class() (autodoc2.render.myst_.MystRenderer method) (autodoc2.render.rst_.RstRenderer method) render_data() (autodoc2.render.myst_.MystRenderer method) (autodoc2.render.rst_.RstRenderer method) RENDER_ERROR (autodoc2.utils.WarningSubtypes attribute) render_exception() (autodoc2.render.myst_.MystRenderer method) (autodoc2.render.rst_.RstRenderer method) render_function() (autodoc2.render.myst_.MystRenderer method) (autodoc2.render.rst_.RstRenderer method) render_item() (autodoc2.render.base.RendererBase method) (autodoc2.render.myst_.MystRenderer method) (autodoc2.render.rst_.RstRenderer method) render_method() (autodoc2.render.myst_.MystRenderer method) (autodoc2.render.rst_.RstRenderer method) render_module() (autodoc2.render.myst_.MystRenderer method) (autodoc2.render.rst_.RstRenderer method) render_package() (autodoc2.render.myst_.MystRenderer method) (autodoc2.render.rst_.RstRenderer method) render_plugin (autodoc2.config.Config attribute) render_plugin_regexes (autodoc2.config.Config attribute) render_property() (autodoc2.render.myst_.MystRenderer method) (autodoc2.render.rst_.RstRenderer method) RendererBase (class in autodoc2.render.base) replace_annotations (autodoc2.config.Config attribute) replace_bases (autodoc2.config.Config attribute) report() (aiida.engine.Process method) Repository (class in aiida.repository) repository_path (aiida.manage.Profile property) request() (aiida.manage.RabbitmqManagementClient method) request_job_info_update() (aiida.engine.JobManager method) (aiida.engine.JobsList method) required_arguments (autodoc2.sphinx.autodoc.AutodocObject attribute) (autodoc2.sphinx.docstring.DocstringRenderer attribute) (autodoc2.sphinx.summary.AutodocSummary attribute) REQUIRED_KEYS (aiida.manage.Profile attribute) res (aiida.orm.CalcJobNode property) reset() (aiida.common.ProgressReporterAbstract method) (aiida.orm.EntityExtras method) (aiida.orm.NodeAttributes method) (aiida.repository.Repository method) reset_cell() (aiida.orm.StructureData method) reset_mass() (aiida.orm.Kind method) reset_sites_positions() (aiida.orm.StructureData method) resolve_annotation() (in module autodoc2.astroid_utils) resolve_import_alias() (in module autodoc2.astroid_utils) resolve_qualname() (in module autodoc2.astroid_utils) resolved (autodoc2.resolve_all.AllResolveResult attribute) restart_daemon() (aiida.engine.DaemonClient method) results() (aiida.engine.BaseRestartWorkChain method) RETRIEVE_LIST_KEY (aiida.orm.CalcJobNode attribute) RETRIEVE_TEMPORARY_LIST_KEY (aiida.orm.CalcJobNode attribute) retrieved (aiida.parsers.Parser property) RETRIEVING (aiida.common.CalcJobState attribute) RETURN (aiida.common.LinkType attribute) return_annotation (autodoc2.utils.ItemData attribute) reveal() (aiida.orm.Code method) reverse() (aiida.orm.List method) rmdir() (aiida.transports.SshTransport method) (aiida.transports.Transport method) rmq_prefix (aiida.manage.Profile property) rmtree() (aiida.transports.SshTransport method) (aiida.transports.Transport method) root_module (autodoc2.sphinx.extension.EnvCache attribute) RstRenderer (class in autodoc2.render.rst_) run() (aiida.engine.CalcJob method) (aiida.engine.FunctionProcess method) (aiida.engine.Runner method) (aiida.engine.WorkChain method) (autodoc2.sphinx.autodoc.AutodocObject method) (autodoc2.sphinx.docstring.DocstringRenderer method) (autodoc2.sphinx.summary.AutodocSummary method) (in module aiida.engine) run_autodoc() (in module autodoc2.sphinx.extension) run_autodoc_package() (in module autodoc2.sphinx.extension) run_get_node() (aiida.engine.Runner method) (in module aiida.engine) run_get_pk() (aiida.engine.Runner method) (in module aiida.engine) run_process() (aiida.engine.BaseRestartWorkChain method) run_until_complete() (aiida.engine.Runner method) runner (aiida.engine.Process property) Runner (class in aiida.engine) RUNNING (aiida.schedulers.JobState attribute) S sandbox (aiida.repository.SandboxRepositoryBackend property) SandboxRepositoryBackend (class in aiida.repository) save_checkpoint() (aiida.engine.AiiDAPersister method) save_instance_state() (aiida.engine.Process method) (aiida.engine.WorkChain method) schedule() (aiida.engine.Runner method) Scheduler (class in aiida.schedulers) SCHEDULER_DETAILED_JOB_INFO_KEY (aiida.orm.CalcJobNode attribute) SCHEDULER_JOB_ID_KEY (aiida.orm.CalcJobNode attribute) SCHEDULER_LAST_CHECK_TIME_KEY (aiida.orm.CalcJobNode attribute) SCHEDULER_LAST_JOB_INFO_KEY (aiida.orm.CalcJobNode attribute) SCHEDULER_STATE_KEY (aiida.orm.CalcJobNode attribute) scheduler_type (aiida.orm.Computer property) SchedulerError (class in aiida.schedulers) SchedulerFactory() (in module aiida.plugins) SchedulerParsingError (class in aiida.schedulers) schema (aiida.manage.Option property) SERIAL (aiida.common.CodeRunMode attribute) serialize() (aiida.engine.PortNamespace method) (aiida.engine.WithSerialize method) (aiida.orm.NodeRepository method) (aiida.repository.File method) (aiida.repository.Repository method) (aiida.schedulers.JobInfo method) serialize_field() (aiida.schedulers.JobInfo class method) set() (aiida.orm.EntityExtras method) (aiida.orm.NodeAttributes method) set_append_text() (aiida.orm.Code method) (aiida.orm.Computer method) set_array() (aiida.orm.ArrayData method) set_ase() (aiida.orm.CifData method) (aiida.orm.StructureData method) set_auth_params() (aiida.orm.AuthInfo method) set_automatic_kind_name() (aiida.orm.Kind method) set_backend() (aiida.repository.Repository method) set_bands() (aiida.orm.BandsData method) set_cell() (aiida.orm.KpointsData method) (aiida.orm.StructureData method) set_cell_angles() (aiida.orm.StructureData method) set_cell_from_structure() (aiida.orm.KpointsData method) set_cell_lengths() (aiida.orm.StructureData method) set_checkpoint() (aiida.orm.ProcessNode method) set_content() (aiida.orm.Comment method) set_debug() (aiida.orm.QueryBuilder method) set_default_memory_per_machine() (aiida.orm.Computer method) set_default_mpiprocs_per_machine() (aiida.orm.Computer method) set_default_profile() (aiida.manage.Config method) set_description_str() (aiida.common.ProgressReporterAbstract method) set_detailed_job_info() (aiida.orm.CalcJobNode method) set_dict() (aiida.orm.Dict method) set_exception() (aiida.orm.ProcessNode method) set_exit_message() (aiida.orm.ProcessNode method) set_exit_status() (aiida.orm.ProcessNode method) set_file() (aiida.orm.CifData method) (aiida.orm.SinglefileData method) (aiida.orm.UpfData method) set_files() (aiida.orm.Code method) set_input_plugin_name() (aiida.orm.Code method) set_job_id() (aiida.orm.CalcJobNode method) set_kpoints() (aiida.orm.KpointsData method) set_kpoints_mesh() (aiida.orm.KpointsData method) set_kpoints_mesh_from_density() (aiida.orm.KpointsData method) set_kpointsdata() (aiida.orm.BandsData method) set_last_job_info() (aiida.orm.CalcJobNode method) set_list() (aiida.orm.List method) set_local_executable() (aiida.orm.Code method) set_logger_extra() (aiida.transports.Transport method) set_many() (aiida.orm.EntityExtras method) (aiida.orm.NodeAttributes method) set_metadata() (aiida.orm.AuthInfo method) set_minimum_job_poll_interval() (aiida.orm.Computer method) set_mpirun_command() (aiida.orm.Computer method) set_mtime() (aiida.orm.Comment method) set_option() (aiida.manage.Config method) (aiida.manage.Profile method) (aiida.orm.CalcJobNode method) set_options() (aiida.orm.CalcJobNode method) set_orbital_dict() (aiida.tools.Orbital method) set_orbitals() (aiida.orm.OrbitalData method) (aiida.orm.ProjectionData method) set_parse_policy() (aiida.orm.CifData method) set_pbc() (aiida.orm.StructureData method) set_prepend_text() (aiida.orm.Code method) (aiida.orm.Computer method) set_process_controller() (aiida.manage.Profile method) set_process_label() (aiida.orm.ProcessNode method) set_process_state() (aiida.orm.ProcessNode method) set_process_status() (aiida.orm.ProcessNode method) set_process_type() (aiida.orm.ProcessNode method) set_progress_bar_tqdm() (in module aiida.common) set_progress_reporter() (in module aiida.common) set_projectiondata() (aiida.orm.ProjectionData method) set_property() (aiida.orm.Computer method) set_pymatgen() (aiida.orm.StructureData method) set_pymatgen_molecule() (aiida.orm.StructureData method) set_pymatgen_structure() (aiida.orm.StructureData method) set_reference_bandsdata() (aiida.orm.ProjectionData method) set_remote_computer_exec() (aiida.orm.Code method) set_remote_path() (aiida.orm.RemoteData method) set_remote_workdir() (aiida.orm.CalcJobNode method) set_retrieve_list() (aiida.orm.CalcJobNode method) set_retrieve_temporary_list() (aiida.orm.CalcJobNode method) set_scan_type() (aiida.orm.CifData method) set_scheduler_state() (aiida.orm.CalcJobNode method) set_shebang() (aiida.orm.Computer method) set_source() (aiida.orm.Data method) set_state() (aiida.orm.CalcJobNode method) set_status() (aiida.engine.Process method) set_stepper_state_info() (aiida.orm.WorkChainNode method) set_storage() (aiida.manage.Profile method) set_structurelist() (aiida.orm.TrajectoryData method) set_symbols_and_weights() (aiida.orm.Kind method) set_trajectory() (aiida.orm.TrajectoryData method) set_transport() (aiida.schedulers.Scheduler method) set_use_double_quotes() (aiida.orm.Code method) (aiida.orm.Computer method) set_user() (aiida.orm.Comment method) set_values() (aiida.orm.CifData method) set_workdir() (aiida.orm.Computer method) set_x() (aiida.orm.XyData method) set_y() (aiida.orm.XyData method) setup() (aiida.engine.BaseRestartWorkChain method) (in module autodoc2) (in module autodoc2.sphinx.extension) sftp (aiida.transports.SshTransport property) ShebangParamType (class in aiida.cmdline) shell_complete() (aiida.cmdline.CodeParamType method) (aiida.cmdline.ComputerParamType method) (aiida.cmdline.ConfigOptionParamType method) (aiida.cmdline.GroupParamType method) (aiida.cmdline.PluginParamType method) (aiida.cmdline.ProfileParamType method) (aiida.cmdline.UserParamType method) should_run_process() (aiida.engine.BaseRestartWorkChain method) show_annotations() (autodoc2.render.base.RendererBase method) show_class_inheritance() (autodoc2.render.base.RendererBase method) show_docstring() (autodoc2.render.base.RendererBase method) show_module_summary() (autodoc2.render.base.RendererBase method) show_mpl() (aiida.orm.BandsData method) show_mpl_heatmap() (aiida.orm.TrajectoryData method) show_mpl_pos() (aiida.orm.TrajectoryData method) SINGLE_OUTPUT_LINKNAME (aiida.engine.Process attribute) SinglefileData (class in aiida.orm) Site (class in aiida.orm) sites (aiida.orm.StructureData property) skip_module_regexes (autodoc2.config.Config attribute) sort() (aiida.orm.List method) sort_names (autodoc2.config.Config attribute) source (aiida.orm.Data property) source_list (aiida.orm.RemoteStashFolderData property) spec() (aiida.engine.Process class method) (aiida.engine.WorkChain class method) spec_metadata() (aiida.engine.Process method) spec_options() (aiida.engine.CalcJob method) spglib_tuple_to_structure() (in module aiida.tools) sshclient (aiida.transports.SshTransport property) SshTransport (class in aiida.transports) standalone (autodoc2.render.base.RendererBase property) start() (aiida.engine.Runner method) start_daemon() (aiida.engine.DaemonClient method) stash_mode (aiida.orm.RemoteStashData property) STASHING (aiida.common.CalcJobState attribute) StashMode (class in aiida.common) stat() (aiida.transports.SshTransport method) State (class in autodoc2.analysis) status (aiida.engine.ExitCode attribute) stepper_state_info (aiida.orm.WorkChainNode property) STEPPER_STATE_INFO_KEY (aiida.orm.WorkChainNode attribute) stop() (aiida.engine.Runner method) stop_daemon() (aiida.engine.DaemonClient method) storage_backend (aiida.manage.Profile property) storage_cls (aiida.manage.Profile property) storage_config (aiida.manage.Profile property) StorageFactory() (in module aiida.plugins) StorageMigrationError store() (aiida.manage.Config method) (aiida.orm.CifData method) (aiida.orm.Computer method) (aiida.orm.Entity method) (aiida.orm.Group method) (aiida.orm.Node method) (aiida.orm.UpfData method) store_all() (aiida.orm.Node method) StoringNotAllowed Str (class in aiida.orm) structure_to_spglib_tuple() (in module aiida.tools) StructureData (class in aiida.orm) submit() (aiida.engine.Process method) (aiida.engine.Runner method) (in module aiida.engine) submit_from_script() (aiida.schedulers.Scheduler method) SUBMITTING (aiida.common.CalcJobState attribute) summary_option() (in module autodoc2.sphinx.docstring) SUSPENDED (aiida.schedulers.JobState attribute) symbol (aiida.orm.Kind property) symbols (aiida.orm.Kind property) (aiida.orm.TrajectoryData property) symlink() (aiida.transports.SshTransport method) (aiida.transports.Transport method) T target_basepath (aiida.orm.RemoteStashFolderData property) terminate() (aiida.engine.CalcJob static method) TestsNotAllowedError time (aiida.orm.Log property) to_aiida_type() (in module aiida.orm) to_context() (aiida.engine.WorkChain method) ToContext (in module aiida.engine) tools (aiida.orm.CalcJobNode property) total (aiida.common.ProgressReporterAbstract property) TQDM_BAR_FORMAT (in module aiida.common) TrajectoryData (class in aiida.orm) transport (aiida.engine.Runner property) (aiida.schedulers.Scheduler property) Transport (class in aiida.transports) transport_type (aiida.orm.Computer property) TransportFactory() (in module aiida.plugins) TransportTaskException type (autodoc2.utils.ItemData attribute) type_string (aiida.orm.Group property) U UNDETERMINED (aiida.schedulers.JobState attribute) UniqueError UniquenessError units (aiida.orm.BandsData property) unpause() (aiida.orm.ProcessNode method) unset_option() (aiida.manage.Config method) (aiida.manage.Profile method) UnsupportedSpeciesError update() (aiida.common.ProgressReporterAbstract method) update_dict() (aiida.orm.Dict method) update_outputs() (aiida.engine.Process method) update_profile() (aiida.manage.Config method) UpfData (class in aiida.orm) UpfFamily (class in aiida.orm) upgrade_config() (in module aiida.manage) UPLOADING (aiida.common.CalcJobState attribute) use_double_quotes (aiida.orm.AbstractCode property) user (aiida.orm.AuthInfo property) (aiida.orm.Comment property) USER (aiida.orm.EntityTypes attribute) user (aiida.orm.Group property) (aiida.orm.Node property) User (class in aiida.orm) UserParamType (class in aiida.cmdline) uuid (aiida.engine.Process property) (aiida.manage.Profile property) (aiida.orm.Comment property) (aiida.orm.Computer property) (aiida.orm.Group property) (aiida.orm.Log property) (aiida.orm.Node property) (aiida.orm.User property) (aiida.repository.AbstractRepositoryBackend property) (aiida.repository.DiskObjectStoreRepositoryBackend property) (aiida.repository.Repository property) (aiida.repository.SandboxRepositoryBackend property) V valid_type (aiida.manage.Option property) validate() (aiida.common.DefaultFieldsAttributeDict method) (aiida.manage.Config static method) (aiida.manage.Option method) (aiida.orm.Computer method) validate_entry_point_group() (aiida.cmdline.PluginParamType method) validate_filepath_executable() (aiida.orm.InstalledCode method) validate_inputs() (aiida.engine.FunctionProcess class method) validate_link() (in module aiida.orm) validate_link_label() (in module aiida.common) validate_port_name() (aiida.engine.PortNamespace static method) validate_profile() (aiida.manage.Config method) validate_remote_exec_path() (aiida.orm.Code method) validate_resources() (aiida.schedulers.JobResource class method) (aiida.schedulers.NodeNumberJobResource class method) (aiida.schedulers.ParEnvJobResource class method) (aiida.schedulers.Scheduler class method) validate_working_directory() (aiida.orm.AbstractCode method) (aiida.orm.PortableCode method) ValidationError, [1] value (aiida.orm.BaseType property) (aiida.orm.EnumData property) (autodoc2.utils.ItemData attribute) values (aiida.orm.CifData property) VerdiCommandGroup (class in aiida.cmdline) version (aiida.manage.Config property) version_callback() (in module autodoc2.cli) version_oldest_compatible (aiida.manage.Config property) version_settings (aiida.manage.Config property) virtualenv (aiida.engine.DaemonClient property) W walk() (aiida.orm.NodeRepository method) (aiida.repository.Repository method) (aiida.tools.GroupPath method) walk_node() (in module autodoc2.analysis) walk_nodes() (aiida.tools.GroupPath method) warn() (autodoc2.render.base.RendererBase method) warn_sphinx() (in module autodoc2.sphinx.utils) WarningSubtypes (class in autodoc2.utils) weights (aiida.orm.Kind property) whoami() (aiida.transports.Transport method) with_dbenv() (in module aiida.cmdline) with_interrupt() (aiida.engine.InterruptableFuture method) WithNonDb (class in aiida.engine) WITHSCHEDULER (aiida.common.CalcJobState attribute) WithSerialize (class in aiida.engine) WorkChain (class in aiida.engine) WorkChainNode (class in aiida.orm) WorkflowFactory() (in module aiida.plugins) WorkflowNode (class in aiida.orm) WorkflowParamType (class in aiida.cmdline) workfunction() (in module aiida.engine) WorkFunctionNode (class in aiida.orm) write() (autodoc2.db.InMemoryDb method) (in module autodoc2.cli) X XyData (class in aiida.orm) Y yield_annotation_assign() (in module autodoc2.analysis) yield_assign() (in module autodoc2.analysis) yield_class_def() (in module autodoc2.analysis) yield_function_def() (in module autodoc2.analysis) yield_module() (in module autodoc2.analysis) yield_modules() (in module autodoc2.utils)